kaivamannam / clinicalnlp-ade
Clinical NLP concept extraction of ADEs in the 2018 n2c2 Adverse Drug Events and Medication Extraction (Track 2). Includes data preprocessing, model training/evaluation scripts.
☆16Updated 4 years ago
Alternatives and similar repositories for clinicalnlp-ade:
Users that are interested in clinicalnlp-ade are comparing it to the libraries listed below
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆146Updated last year
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- ☆38Updated 2 years ago
- ☆57Updated last year
- ☆96Updated 3 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆59Updated 2 years ago
- ☆66Updated 2 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated 10 months ago
- Code for the emrQA question answering dataset☆144Updated 3 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆61Updated 3 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆158Updated 3 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated 2 years ago
- ☆16Updated 2 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆28Updated last year
- Notebook for BERT medical named entity recognition☆39Updated 2 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 4 years ago
- Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation☆48Updated 3 years ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆55Updated last year
- NER and Relation Extraction from Electronic Health Records (EHR).☆86Updated 2 years ago
- Dataset for medical question summarization introduced in the ACL 2019 paper "On the Summarization of Consumer Health Questions" (A. Ben A…☆29Updated 2 years ago
- ☆18Updated 10 months ago
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆93Updated 7 months ago
- BioELECTRA☆51Updated 3 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆28Updated 3 years ago
- PubMed PICO Element Detection Dataset☆56Updated 6 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 4 months ago
- ☆33Updated 8 years ago
- ☆47Updated 3 years ago