Med-BERT, contextualized embedding model for structured EHR data
☆332Feb 19, 2024Updated 2 years ago
Alternatives and similar repositories for Med-BERT
Users that are interested in Med-BERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- source codes based on PyTorch to analyze EHR☆150Jan 22, 2024Updated 2 years ago
- Code for BEHRT: Transformer for Electronic Health Records☆131Apr 6, 2023Updated 3 years ago
- ☆11Jan 12, 2022Updated 4 years ago
- python code for BRLTM model☆14Jan 17, 2021Updated 5 years ago
- Pre-training of Graph Augmented Transformers for Medication Recommendation☆128Jun 15, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆183Updated this week
- Python package for machine learning for healthcare using a OMOP common data model☆111Jun 17, 2023Updated 3 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32May 6, 2023Updated 3 years ago
- ☆51Oct 25, 2023Updated 2 years ago
- Code for "DuETT: Dual Event Time Transformer for Electronic Health Records"☆22Aug 31, 2023Updated 3 years ago
- repository for Publicly Available Clinical BERT Embeddings☆776Aug 25, 2020Updated 6 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆453Oct 17, 2022Updated 3 years ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆19Mar 8, 2023Updated 3 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆600Mar 25, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Patient Code & Text Representation Learning☆19May 22, 2023Updated 3 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆233Jun 6, 2025Updated last year
- LLM Embeddings for ICD 10 Data☆65Dec 10, 2024Updated last year
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆50Dec 9, 2025Updated 10 months ago
- RETAIN: Interpretable Predictive Model in Healthcare using Reverse Time Attention Mechanism☆230Nov 4, 2017Updated 8 years ago
- Code for "Graph Neural Network on Electronic Health Records for Predicting Alzheimer’s Disease"☆279Sep 13, 2024Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆100Mar 19, 2026Updated 6 months ago
- Medical Concept Annotation Tool☆531Jul 25, 2025Updated last year
- ☆10Apr 19, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Time-Sensitive Deep Learning for ICU Outcome Prediction Without Variable Selection or Cleaning.☆19Jul 6, 2020Updated 6 years ago
- Graph-based Attention Model☆249Apr 17, 2023Updated 3 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆140Jun 12, 2026Updated 4 months ago
- An interpretable foundation model of the patient clinical timeline: event forecasting, calibrated time-to-event alerts, and concept-level…☆61Oct 8, 2026Updated last week
- ☆13Oct 20, 2022Updated 3 years ago
- A Serverless Text Annotation Tool for Corpus Development☆64Feb 19, 2025Updated last year
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,213Aug 13, 2023Updated 3 years ago
- ☆34Jul 28, 2018Updated 8 years ago
- Code for doing machine learning with various EHRs☆21Mar 1, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆157Sep 13, 2023Updated 3 years ago
- Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction☆32Jul 26, 2019Updated 7 years ago
- Code and dataset of EMNLP 2020 paper "Infusing Disease Knowledge into BERT for Health Question Answering, Medical Inference and Disease N…☆69Jul 19, 2021Updated 5 years ago
- ☆64Jul 4, 2023Updated 3 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆251Aug 24, 2020Updated 6 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆75Mar 12, 2023Updated 3 years ago
- Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.☆430Oct 7, 2022Updated 4 years ago