ZhiGroup / Med-BERT
Med-BERT, contextualized embedding model for structured EHR data
☆279Updated last year
Alternatives and similar repositories for Med-BERT:
Users that are interested in Med-BERT are comparing it to the libraries listed below
- source codes based on PyTorch to analyze EHR☆134Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆108Updated last year
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆115Updated last year
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆159Updated last month
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 9 months ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆130Updated 2 weeks ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆407Updated 2 years ago
- Blog post on Medium☆48Updated 2 years ago
- Predicting ICD Codes from Clinical Notes☆57Updated 4 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆55Updated last year
- repository for Publicly Available Clinical BERT Embeddings☆701Updated 4 years ago
- all scripts used in gatortron project☆113Updated last year
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆110Updated last year
- A customizable pipeline for data extraction from MIMIC-IV.☆209Updated last year
- ☆36Updated last year
- A collection of papers on automated medical coding from free-texts☆136Updated 2 months ago
- General tutorials for the setup and use of MedCAT.☆37Updated 2 months ago
- ☆97Updated 3 years ago
- Medical Concept Annotation Tool☆479Updated this week
- ☆65Updated last week
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆146Updated last year
- multilabel classification of EHR notes☆285Updated 4 years ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆43Updated last year
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆64Updated 3 weeks ago
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆52Updated 2 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated last week
- ☆222Updated 3 years ago
- Patient Code & Text Representation Learning☆20Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆77Updated 2 years ago
- PMC-Patients☆92Updated 9 months ago