Med-BERT, contextualized embedding model for structured EHR data
☆316Feb 19, 2024Updated 2 years ago
Alternatives and similar repositories for Med-BERT
Users that are interested in Med-BERT are comparing it to the libraries listed below
Sorting:
- Code for BEHRT: Transformer for Electronic Health Records☆120Apr 6, 2023Updated 2 years ago
- MiME Repository☆105Nov 14, 2019Updated 6 years ago
- ☆12Jan 12, 2022Updated 4 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32May 6, 2023Updated 2 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆162Feb 23, 2026Updated last week
- Python package for machine learning for healthcare using a OMOP common data model☆111Jun 17, 2023Updated 2 years ago
- Pre-training of Graph Augmented Transformers for Medication Recommendation☆127Jun 15, 2019Updated 6 years ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆19Mar 8, 2023Updated 2 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆588Mar 25, 2023Updated 2 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆434Oct 17, 2022Updated 3 years ago
- Code for "Graph Neural Network on Electronic Health Records for Predicting Alzheimer’s Disease"☆275Sep 13, 2024Updated last year
- ☆47Oct 25, 2023Updated 2 years ago
- Medical Concept Annotation Tool☆523Jul 25, 2025Updated 7 months ago
- A simple implementation of the paper "Disease Prediction via Graph Neural Networks".☆22Feb 3, 2021Updated 5 years ago
- Multimodal Transformers for biomedical text and Knowledge Graph data☆34Mar 3, 2023Updated 3 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆156Sep 13, 2023Updated 2 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Nov 20, 2020Updated 5 years ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆39Aug 5, 2025Updated 7 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Jun 25, 2025Updated 8 months ago
- ☆63Jul 4, 2023Updated 2 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆210Jun 6, 2025Updated 9 months ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆76Mar 12, 2023Updated 2 years ago
- Patient Code & Text Representation Learning☆19May 22, 2023Updated 2 years ago
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,187Aug 13, 2023Updated 2 years ago
- Self-supervised graph learning with hyperbolic embedding for temporal health event prediction (IEEE Cybernetics)☆15Oct 31, 2020Updated 5 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆71May 5, 2025Updated 10 months ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Jan 17, 2022Updated 4 years ago
- A Serverless Text Annotation Tool for Corpus Development☆59Feb 19, 2025Updated last year
- Code for "DuETT: Dual Event Time Transformer for Electronic Health Records"☆23Aug 31, 2023Updated 2 years ago
- SMedBERT: A Knowledge-Enhanced Pre-trained Language Model withStructured Semantics for Medical Text Mining☆83Nov 17, 2021Updated 4 years ago
- Transformers for Clinical NLP☆27Feb 28, 2026Updated last week
- ☆17Oct 24, 2020Updated 5 years ago
- Graph-based Attention Model☆246Apr 17, 2023Updated 2 years ago
- Repository for Med2Vec project☆220Apr 21, 2018Updated 7 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Feb 6, 2023Updated 3 years ago
- Time-Sensitive Deep Learning for ICU Outcome Prediction Without Variable Selection or Cleaning.☆19Jul 6, 2020Updated 5 years ago
- Chronic Disease Prediction Using Medical Notes☆272Sep 26, 2019Updated 6 years ago
- all scripts used in gatortron project☆130Nov 3, 2023Updated 2 years ago
- ☆40Feb 17, 2022Updated 4 years ago