The computational and statistical analyses of TenK10K phase 1 multiome data
☆18May 12, 2026Updated 2 months ago
Alternatives and similar repositories for tenk10k_phase1_multiome
Users that are interested in tenk10k_phase1_multiome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Causal discovery of gene regulatory programs from single-cell genomics☆21Sep 5, 2025Updated 11 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated last week
- Robust and efficient analysis of single-cell perturbation studies☆15Updated this week
- Phenotype Associated Spatial Signature Analysis with Graph-based Embedding☆26Mar 5, 2025Updated last year
- ☆28Dec 10, 2025Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An accurate and efficient colocalization method accounting for multiple causal signals☆14Jun 3, 2024Updated 2 years ago
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆21May 28, 2026Updated 2 months ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆24Jan 25, 2023Updated 3 years ago
- VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations☆32May 3, 2026Updated 3 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆36Jan 8, 2025Updated last year
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆18Feb 26, 2018Updated 8 years ago
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆29Jul 17, 2026Updated 3 weeks ago
- ☆45Apr 15, 2026Updated 3 months ago
- ☆29Sep 4, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Coding Standards for the USC Biostats group☆36May 5, 2026Updated 3 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆50Sep 1, 2023Updated 2 years ago
- Mediated Expression Score Regression (MESC)☆29Nov 4, 2025Updated 9 months ago
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆22Jul 22, 2026Updated 2 weeks ago
- Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.☆218Jul 11, 2026Updated 3 weeks ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆17Aug 1, 2025Updated last year
- ☆76May 27, 2026Updated 2 months ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆71Jun 6, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bayesian Consensus Clustering, packaged up from code by Eric F. Lock☆19Jun 15, 2023Updated 3 years ago
- Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization☆27Oct 29, 2019Updated 6 years ago
- ☆16Jul 23, 2026Updated 2 weeks ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆34Updated this week
- Repository to ZIP Plink2 LD files and have random access☆17Updated this week
- ☆15Jul 24, 2024Updated 2 years ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Simple scVI implementation☆13Jul 13, 2026Updated 3 weeks ago
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆22Apr 26, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PM520 Advanced Statistical Computing☆16Apr 3, 2026Updated 4 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Apr 1, 2026Updated 4 months ago
- ☆68Dec 30, 2021Updated 4 years ago
- An R package to convert SingeCellExperiment and Seurat objects into anndata as comprehensively as possible.☆14May 19, 2026Updated 2 months ago
- The official repository for the ARSENAL model☆18Jul 3, 2026Updated last month
- Stress-Free Descriptive Tables in Python☆16Apr 2, 2023Updated 3 years ago
- Repository for the tutorials of STARNet, a computational framework designed to decipher spatially specific gene regulatory networks (GRNs…☆15Jun 9, 2026Updated 2 months ago