epruesse / SINALinks
SINA - Reference based multiple sequence alignment
☆42Updated 4 years ago
Alternatives and similar repositories for SINA
Users that are interested in SINA are comparing it to the libraries listed below
Sorting:
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 7 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Estimate metagenomic coverage and sequence diversity☆54Updated 10 months ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 4 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- IS mapping software☆54Updated 3 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 4 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆44Updated 11 months ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆48Updated 3 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- GraftM - Rapid community profiles from metagenomes☆45Updated 11 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- Visualize whole genome alignments as linear maps☆73Updated 9 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Automatic Assembly For The Fungi☆21Updated 5 months ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- A tool for agile functional analysis of shotgun metagenomic data☆24Updated 9 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆71Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago