epruesse / SINALinks
SINA - Reference based multiple sequence alignment
☆41Updated 4 years ago
Alternatives and similar repositories for SINA
Users that are interested in SINA are comparing it to the libraries listed below
Sorting:
- Protein Alignment and Detection Interface☆60Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆60Updated 6 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- ☆75Updated this week
- ☆30Updated 8 months ago
- A package to annotate protein sequences☆59Updated 6 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 2 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 7 months ago
- ☆45Updated 2 years ago
- Woltka: a versatile meta'omic data classifier☆75Updated last week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 7 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 10 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆64Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆89Updated 3 months ago
- ☆32Updated 8 months ago
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Updated 9 years ago
- StrainFinder☆27Updated 7 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆32Updated 11 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆73Updated 2 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆41Updated last year
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆71Updated last week
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago