epruesse / SINALinks
SINA - Reference based multiple sequence alignment
☆41Updated 5 years ago
Alternatives and similar repositories for SINA
Users that are interested in SINA are comparing it to the libraries listed below
Sorting:
- Protein Alignment and Detection Interface☆60Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆62Updated 6 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Woltka: a versatile meta'omic data classifier☆75Updated 3 months ago
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- MEGAN Community Edition☆72Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆60Updated last year
- ☆81Updated 2 weeks ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆84Updated 7 years ago
- Prediction of prophages from bacterial genomes☆81Updated 6 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- IS mapping software☆57Updated 4 years ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated 3 weeks ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆129Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆72Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- A listing of software, tools and databases useful for virome analysis☆58Updated last week
- Snakemake pipeline for simulating shotgun metagenomic samples☆28Updated 3 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago