epruesse / SINALinks
SINA - Reference based multiple sequence alignment
☆41Updated 5 years ago
Alternatives and similar repositories for SINA
Users that are interested in SINA are comparing it to the libraries listed below
Sorting:
- Protein Alignment and Detection Interface☆60Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆65Updated 6 years ago
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- gutSMASH☆57Updated 3 months ago
- Woltka: a versatile meta'omic data classifier☆76Updated 4 months ago
- MEGAN Community Edition☆72Updated last year
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆84Updated 7 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated last week
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Updated last year
- ☆45Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- ☆81Updated 2 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 2 months ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Updated 4 months ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆45Updated last year
- Scalable creating/updating of metagenome profiling databases☆63Updated 7 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated last year
- A listing of software, tools and databases useful for virome analysis☆59Updated this week
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆58Updated this week
- CLI tool to annotate genes with KOfam☆88Updated 2 years ago