☆93Sep 7, 2022Updated 3 years ago
Alternatives and similar repositories for GeoPPI
Users that are interested in GeoPPI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- open source repository☆149Nov 30, 2023Updated 2 years ago
- ☆77Sep 2, 2020Updated 5 years ago
- Efficient evolution from protein language models☆226Aug 26, 2023Updated 2 years ago
- ☆23Jun 24, 2022Updated 4 years ago
- Physical energy function for protein sequence design☆38May 6, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆174Nov 30, 2022Updated 3 years ago
- ☆110Apr 1, 2023Updated 3 years ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆422Sep 3, 2023Updated 2 years ago
- AbLang: A language model for antibodies☆167Sep 22, 2023Updated 2 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- ☆12May 16, 2020Updated 6 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆366Jun 29, 2023Updated 3 years ago
- ☆19Oct 4, 2022Updated 3 years ago
- Antibody Binding Mutational Database☆42Apr 10, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆249May 22, 2023Updated 3 years ago
- ☆119Dec 7, 2022Updated 3 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆132Feb 26, 2025Updated last year
- ☆18Mar 13, 2024Updated 2 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆17May 2, 2021Updated 5 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆762Jun 19, 2024Updated 2 years ago
- Pretrainable geometric graph neural network for antibody affinity maturation☆79Mar 18, 2025Updated last year
- ☆37Jan 15, 2023Updated 3 years ago
- Rifdock Library for Conformational Search☆174May 16, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Jan 26, 2022Updated 4 years ago
- ☆30Apr 2, 2026Updated 3 months ago
- Tool for modelling the CDRs of antibodies☆52Jan 19, 2023Updated 3 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- DLPacker☆32Aug 26, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Official code for "Integration of pre-trained protein language models into geometric deep learning networks"☆23Jun 14, 2025Updated last year
- ☆131Sep 5, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆23Jul 4, 2021Updated 5 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 2 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- Code for ColabDock paper☆157May 1, 2025Updated last year
- An antibody-specific language model focusing on NGL prediction☆28Mar 8, 2025Updated last year
- A protein 3D structure prediction application☆67May 5, 2021Updated 5 years ago