Alternatives and similar repositories for GeoPPI:

Users that are interested in GeoPPI are comparing it to the libraries listed below

• vamships / PECAN
  Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction
  ☆34Updated 4 years ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆59Updated 8 months ago
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆39Updated 3 years ago
• dahjan / DMS_opt
  ☆68Updated 4 years ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆71Updated 4 years ago
• DeepGraphLearning / GearBind
  Pretrainable geometric graph neural network for antibody affinity maturation
  ☆52Updated last month
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆47Updated 4 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆96Updated last month
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆146Updated 6 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆68Updated 3 months ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆108Updated 2 years ago
• jertubiana / ScanNet
  ☆124Updated last year
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆63Updated last month
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆57Updated 10 months ago
• KailiWang1 / DeepDTAF
  a deep learning architecture for protein-ligand binding affinity prediction
  ☆73Updated last year
• leeyang / DRfold
  ☆39Updated last year
• HBioquant / DiffBindFR
  Diffusion model based protein-ligand flexible docking method
  ☆104Updated 5 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆58Updated 2 years ago
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆36Updated 2 years ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆30Updated last month
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆52Updated last year
• TencentAILabHealthcare / PALM
  ☆43Updated last year
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆136Updated last year
• Fleishman-Lab / CUMAb
  ☆19Updated last week
• varun-shanker / structural-evolution
  ☆101Updated 9 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆104Updated last month
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆58Updated last year
• MartinThoma / propy3
  A Python 3 version of the protein descriptor package propy
  ☆41Updated 2 years ago
• wengong-jin / abdockgen
  ☆106Updated 2 years ago
• levinthal / Pallatom
  ☆91Updated 5 months ago