Alternatives and similar repositories for GeoPPI

Users that are interested in GeoPPI are comparing it to the libraries listed below

• dahjan / DMS_opt
  ☆73Updated 5 years ago
• vamships / PECAN
  Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction
  ☆34Updated 5 years ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆75Updated 5 years ago
• DeepGraphLearning / GearBind
  Pretrainable geometric graph neural network for antibody affinity maturation
  ☆68Updated 8 months ago
• CAODH / EquiScore
  ☆79Updated last year
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆63Updated 2 years ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆56Updated 4 months ago
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆143Updated 2 years ago
• HBioquant / DiffBindFR
  Diffusion model based protein-ligand flexible docking method
  ☆115Updated last year
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆37Updated 2 years ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆118Updated 8 months ago
• jcchan23 / GraphSol
  Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted cont…
  ☆76Updated 3 years ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆91Updated 3 months ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆164Updated last week
• jertubiana / ScanNet
  ☆135Updated 5 months ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆61Updated last year
• enai4bio / DeepAAI
  DeepAAI
  ☆35Updated 11 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆67Updated 3 months ago
• KailiWang1 / DeepDTAF
  a deep learning architecture for protein-ligand binding affinity prediction
  ☆76Updated last year
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆101Updated 2 weeks ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆134Updated 3 years ago
• samsledje / ConPLex_dev
  ☆54Updated last year
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆66Updated 3 years ago
• varun-shanker / structural-evolution
  ☆116Updated last year
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆69Updated 3 weeks ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆165Updated 2 months ago
• wengong-jin / abdockgen
  ☆107Updated 2 years ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆41Updated 4 years ago