harryjubb / pdbtools
Tool(s) for cleaning, munging and analysing PDB files for structural bioinformatics analysis.
☆13Updated 5 years ago
Alternatives and similar repositories for pdbtools:
Users that are interested in pdbtools are comparing it to the libraries listed below
- PCA and normal mode analysis of proteins☆17Updated 10 months ago
- PyMOL Plugin for displaying polar contacts☆17Updated 6 years ago
- Protein-Ligand Interaction Fingerprints☆19Updated 4 years ago
- A parallel molecular docking program based on AutoDock Vina☆19Updated 6 years ago
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Updated 6 months ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- Python script that creates 2D protein-ligand interaction images☆14Updated 6 years ago
- Protein common interface databases☆9Updated 5 years ago
- protein docking using a density-based descriptor for atoms charge and dynamics☆14Updated 2 years ago
- Fast and versatile biomolecular structure PDB file parser using SQL queries☆24Updated 2 years ago
- ☆24Updated 3 years ago
- Python code to automatically interact with PDBePISA web server☆10Updated 2 years ago
- ☆15Updated 6 years ago
- ☆28Updated 11 months ago
- ☆15Updated 2 years ago
- a fast and accurate physical energy function extended from EvoEF for protein sequence design☆25Updated last year
- Identifying peptide-receptor interactions using AlphaFold-Multimer☆26Updated last year
- PyDock Tutorial☆30Updated 6 years ago
- ☆13Updated 7 years ago
- ☆32Updated 4 years ago
- A Python script to map PDB ID + chain ID to UniProt ID.☆16Updated last year
- Peptide Virtual Screening Pipeline☆9Updated 5 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆27Updated last year
- Ligand binding site prediction and virtual screening☆12Updated 6 years ago
- Python package to manage protein structures and their annotations☆42Updated last year
- Peptide library design☆22Updated 4 years ago
- ☆12Updated 5 years ago
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- ☆18Updated 8 months ago
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Updated 7 years ago