Alternatives and similar repositories for EJPLab_Computational_Projects:

Users that are interested in EJPLab_Computational_Projects are comparing it to the libraries listed below

• protddg-bench / protddg-bench
  Scoring methods for predicting the DDG upon protein mutation
  ☆14Updated 2 years ago
• HongzhouTang / BayeStab
  this is the BateStab program
  ☆4Updated 2 years ago
• snerligit / mhc-pep-threader
  ☆12Updated 4 years ago
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 3 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 3 months ago
• LPDI-EPFL / trivalent_cocktail
  ☆11Updated 4 years ago
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆13Updated 3 years ago
• strauchlab / scaffold_design
  ☆17Updated last year
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• ohuelab / MEGADOCK-on-Colab
  MEGADOCK on Google Colaboratory
  ☆15Updated last year
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆19Updated 5 years ago
• tommyhuangthu / EvoEF2
  a fast and accurate physical energy function extended from EvoEF for protein sequence design
  ☆25Updated last year
• masoudk / AsiteDesign
  ☆13Updated last year
• issararab / PEvoLM
  Protein Sequence Evolutionary Information Language Model
  ☆12Updated last year
• AspirinCode / GENiPPI
  Interface-aware molecular generative framework for protein-protein interaction modulators
  ☆13Updated 3 months ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆17Updated 8 months ago
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆25Updated 5 months ago
• compbiomed-unito / acdc-nn
  ☆20Updated 2 years ago
• LLNL / CRPCA
  Computationally Restoring the Potency of a Clinical Antibody
  ☆17Updated last year
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 7 months ago
• Furman-Lab / PatchMAN
  ☆26Updated 7 months ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆16Updated last year
• inpacdb / PepVis
  Peptide Virtual Screening Pipeline
  ☆9Updated 5 years ago
• Wang-Lin-boop / PPI-Miner
  A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design
  ☆17Updated last month
• tianlt / deepdirect
  ☆16Updated last year
• programmablebio / saltnpeppr
  An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
  ☆16Updated 6 months ago
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆21Updated last week
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• ChengfeiYan / PLMGraph-Inter
  A program fror inter-protein contact prediction from structures of interacting proteins
  ☆17Updated 9 months ago
• Wang-Lin-boop / AlphaFoldDB_Processing
  This script can clean up the disordered region in the AlphaFold DB structures to adapt it to the molecular docking, extract the sequence …
  ☆14Updated last year