iamysk / AFsample2
Modelling protein conformational landscape with Alphafold
☆40Updated this week
Alternatives and similar repositories for AFsample2:
Users that are interested in AFsample2 are comparing it to the libraries listed below
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆38Updated 9 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆38Updated last week
- scripts to find PBD structures for cancer driver proteins☆31Updated this week
- ☆34Updated 10 months ago
- ☆46Updated last week
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆36Updated 2 months ago
- ☆41Updated 5 months ago
- Extension of ThermoMPNN for double mutant predictions☆24Updated last month
- code for SeqDance, a biophysics-informed protein language model☆22Updated 3 months ago
- ☆31Updated last year
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆28Updated 2 weeks ago
- Generative diverse protein backbones by protein language model☆29Updated 2 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated 8 months ago
- FeatureDock is a protein-ligand docking software guided by physicochemical feature-based local environment learning using Transformer☆23Updated 4 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆41Updated 2 months ago
- Binding pocket optimization based on force fields and docking scoring functions☆30Updated 2 months ago
- ☆18Updated 3 months ago
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆29Updated 10 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆25Updated 4 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆31Updated 3 months ago
- A fast sampling and analysis tool for biomolecules☆15Updated last month
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆48Updated this week
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Efficient manipulation of protein structures in Python☆51Updated 3 months ago
- ☆36Updated last year
- bakerlab pymol scripts☆19Updated 5 years ago
- DLPacker☆29Updated 5 months ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆17Updated last year