Alternatives and similar repositories for Peptide_docking_with_AF2_and_RosettAfold

Users that are interested in Peptide_docking_with_AF2_and_RosettAfold are comparing it to the libraries listed below

• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆25Updated 2 years ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆35Updated 2 years ago
• Furman-Lab / PatchMAN
  ☆27Updated last month
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆37Updated 2 years ago
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆50Updated last year
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 4 years ago
• oxpig / dlab-public
  Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
  ☆31Updated 3 years ago
• ohuelab / ColabDesign-cyclic-binder
  ☆37Updated 2 years ago
• dina-lab3D / NanoNet
  ☆51Updated 2 years ago
• Graylab / deepH3-distances-orientations
  ☆35Updated 4 years ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆23Updated last year
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 4 years ago
• PKUliujl / GeoSeqBuilder
  ☆32Updated 11 months ago
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆31Updated last year
• RosettaCommons / FvHallucinator
  ☆28Updated 3 years ago
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆27Updated 4 years ago
• dahjan / DMS_opt
  ☆74Updated 5 years ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 6 months ago
• Lailabcode / DeepSCM
  A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…
  ☆28Updated 3 years ago
• bene837 / af2seq
  ☆46Updated last year
• sokrypton / af2bind
  ☆54Updated last month
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆33Updated 2 years ago
• dina-lab3D / CombFold
  ☆89Updated last year
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆40Updated 7 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆72Updated 9 months ago
• cryoEM-CNIO / BinderFlow
  Code for running BinderFlow
  ☆55Updated last month
• rochoa85 / PepFun2
  PepFun 2.0: improved protocols for the analysis of natural and modified peptides
  ☆26Updated 2 years ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆56Updated 6 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year