Scores for Hydrophobicity and Charges based on SASAs
☆41Jun 12, 2025Updated 9 months ago
Alternatives and similar repositories for surface_analyses
Users that are interested in surface_analyses are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jan 9, 2023Updated 3 years ago
- ☆23May 14, 2019Updated 6 years ago
- DeepViscosity is a deep learning ANN model developed to predict high concentrated monoclonal antibody viscosity classes (Low <= 20cps, Hi…☆23Feb 23, 2026Updated last month
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences…☆19Feb 23, 2026Updated last month
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆45Apr 1, 2025Updated last year
- ☆10Apr 30, 2025Updated 11 months ago
- ☆26Apr 22, 2024Updated last year
- python script that picks suitable targets for siRNA with off-target optimization☆16Oct 23, 2021Updated 4 years ago
- A Rust library for calculating the SASA for a protein. 5x faster than Freesasa. Based on the Shrake & Rupley algorithm.☆20Mar 16, 2026Updated 3 weeks ago
- ☆28Aug 26, 2025Updated 7 months ago
- Improved antibody structure-based design using inverse folding☆157Dec 9, 2025Updated 4 months ago
- GATSol, an enhanced predictor of protein solubility through the synergy of 3D structure information and large language modeling☆18Sep 7, 2024Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆13Jul 9, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆22Apr 10, 2025Updated 11 months ago
- Sapiens is a human antibody language model based on BERT.☆73Jan 22, 2026Updated 2 months ago
- Prediction of protein melting temperatures directly from sequences☆12Apr 16, 2024Updated last year
- Protein common interface databases☆10Apr 13, 2019Updated 6 years ago
- Repo of AntiBMPNN project for antibody sequence design.☆33May 28, 2025Updated 10 months ago
- An antibody-specific language model focusing on NGL prediction☆27Mar 8, 2025Updated last year
- Solvent Accessible Surface calculation software for biomolecules.☆19Apr 23, 2023Updated 2 years ago
- Fast, gene-specific joint humanisation of antibody heavy and light chains.☆21Nov 11, 2025Updated 4 months ago
- LIGSIFT: An open-source tool for ligand structural alignment and virtual screening☆15Mar 4, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆92Sep 25, 2024Updated last year
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆13Nov 1, 2023Updated 2 years ago
- ☆21Oct 31, 2024Updated last year
- MSMD (mixed-solvent molecular dynamics) engine and analysis tools☆19Mar 2, 2026Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆48Nov 4, 2025Updated 5 months ago
- Material to run the HADDOCK antibody-antigen modelling protocol☆23Feb 3, 2026Updated 2 months ago
- Collection of tools to calculate properties of natural or synthetic peptides and proteins.☆61Feb 25, 2026Updated last month
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15May 24, 2018Updated 7 years ago
- Contact map analysis for biomolecules; based on MDTraj☆48Jan 25, 2026Updated 2 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆14Sep 8, 2023Updated 2 years ago
- volume calculation and segmentation☆37May 20, 2024Updated last year
- Absolute solvation free energy calculations with OpenFF and OpenMM☆30Dec 1, 2024Updated last year
- Clusters protein chains based on CA distance difference☆16Mar 18, 2026Updated 3 weeks ago
- Calculate the RMSD between two antibody structure (including nanobody and antibody).☆11May 19, 2023Updated 2 years ago
- Antibody-specific masked language model☆72Mar 5, 2026Updated last month
- An antibody-specific language model focusing on NGL prediction☆37Aug 22, 2024Updated last year