tomdstanton / stantlib
☆10Updated this week
Related projects: ⓘ
- ☆23Updated 7 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆45Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆27Updated this week
- A python library for predicting phage lifestyle based on genome sequence☆34Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆21Updated 3 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆17Updated 5 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆34Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Influenza genome analysis Nextflow workflow☆22Updated last month
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆34Updated 2 years ago
- Gene-flank analysis tool☆25Updated 4 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 5 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆35Updated last month
- MAG Circularization Method☆31Updated 2 years ago
- Prophage Activity Estimator☆26Updated 3 months ago
- ☆22Updated 9 months ago
- Bacterial GWAS analysis☆28Updated last week
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆19Updated 9 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆29Updated last week
- Detection of incorrectly labeled sequences across kingdoms☆77Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆35Updated last week
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆25Updated 8 months ago
- Discover and annotate the virome☆29Updated 5 months ago
- Ancient microbiome snakemake workflow☆19Updated 2 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆35Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆44Updated 2 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆28Updated 2 years ago
- Pangenome analysis of eukaryotes.☆17Updated 3 years ago