greenelab / DAPS
Denoising Autoencoders for Phenotype Stratification
☆41Updated 6 years ago
Alternatives and similar repositories for DAPS:
Users that are interested in DAPS are comparing it to the libraries listed below
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 9 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Code sharing related to DREAM challenges☆23Updated 8 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- ☆12Updated 5 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆23Updated 2 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Updated 7 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆33Updated 8 years ago
- R package for normalizing RNA-seq data to make them comparable to microarray data.☆37Updated last year
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 5 years ago
- Python Wrapper for FIt-SNE☆45Updated 3 years ago
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆45Updated 4 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 7 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆104Updated 6 years ago
- 📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.☆14Updated 7 years ago
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- Integrative orthogonal non-negative matrix factorization☆31Updated 5 years ago
- TCGA data acquisition and processing for Project Cognoma☆20Updated 6 years ago
- Similarity Network Fusion☆32Updated 9 years ago
- This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion☆20Updated 3 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 8 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 2 years ago
- This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a n…☆31Updated 6 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 6 years ago
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆18Updated 7 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆28Updated 11 months ago
- https://celehs.github.io/PheCAP/☆21Updated 3 years ago