ISA-tools / RisaLinks
Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomi…
☆20Updated 7 years ago
Alternatives and similar repositories for Risa
Users that are interested in Risa are comparing it to the libraries listed below
Sorting:
- Core Utils for Mass Spectrometry Data☆17Updated 8 months ago
- R interface to Chemical Translation Service (CTS)☆17Updated last year
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13Updated last year
- a Graph database and R package for omic data integration☆20Updated 9 years ago
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Updated 4 years ago
- R Interface to the Metabolights REST API☆11Updated 3 months ago
- Metabolomics Tools for Galaxy☆21Updated 9 years ago
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆12Updated last year
- These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconduc…☆21Updated last year
- Metabolomics experimental design, sample metadata configuration, and sample data acquisition.☆10Updated 7 years ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 5 years ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆21Updated 4 years ago
- ☆17Updated 4 years ago
- data processing for MS-based metabolomics☆15Updated last year
- Interactive software to analyze and browse mass spectrometry data☆21Updated 4 months ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10Updated 8 years ago
- Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, …☆15Updated 7 years ago
- Nextflow-powered MS-DIAL☆10Updated 10 months ago
- Python parser for ISAtab, a biological file format for experimental metadata☆16Updated 8 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- metabolite identification R-package for metabolomic high-resolution LC-MS datasets.☆16Updated 8 years ago
- Low level infrastructure to handle MS spectra☆43Updated 3 weeks ago
- An R package to query EBI's Ontology Lookup Service (OLS)☆11Updated last year
- High level functionality to support and simplify metabolomics data annotation.☆18Updated last month
- A MALDI Mass Spectrometry Bioinformatics Platform☆31Updated 11 months ago
- A web app for exploratory data analysis of high-throughput screens (HTS)☆17Updated 7 years ago
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Updated 5 years ago
- ☆37Updated 2 months ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Updated 7 years ago
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆43Updated 7 months ago