ISA-tools / Risa
Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomi…
☆20Updated 6 years ago
Alternatives and similar repositories for Risa:
Users that are interested in Risa are comparing it to the libraries listed below
- Core Utils for Mass Spectrometry Data☆16Updated 3 weeks ago
- R interface to Chemical Translation Service (CTS)☆14Updated 8 months ago
- These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconduc…☆20Updated 8 months ago
- a Graph database and R package for omic data integration☆20Updated 8 years ago
- Metabolomics Tools for Galaxy☆21Updated 8 years ago
- data processing for MS-based metabolomics☆15Updated 5 months ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10Updated 7 years ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆22Updated 4 years ago
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Updated 4 years ago
- ☆17Updated 4 years ago
- R codes for creating metamapp graphs and files☆8Updated 2 years ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Updated 6 years ago
- An R package to query EBI's Ontology Lookup Service (OLS)☆11Updated 11 months ago
- Assigning precursor-product ion relationships in indiscriminant MS/MS data☆12Updated 2 weeks ago
- Nextflow-powered MS-DIAL☆10Updated 3 months ago
- Reproducible GSEA Benchmarking☆13Updated 5 months ago
- R Interface to the Metabolights REST API☆11Updated last week
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆12Updated 7 months ago
- Interactive software to analyze and browse mass spectrometry data☆21Updated last year
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 5 years ago
- ☆10Updated 4 years ago
- Galaxy tools for metabolomics maintained by Workflow4Metabolomics☆27Updated 2 months ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated 2 years ago
- Metabolomics experimental design, sample metadata configuration, and sample data acquisition.☆10Updated 6 years ago
- Missing value imputation and evaluation, especially for metabolomics data sets☆19Updated 6 years ago
- Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, …☆15Updated 6 years ago
- Template for building a bioconductor workshop package using github actions☆20Updated 9 months ago
- A MALDI Mass Spectrometry Bioinformatics Platform☆30Updated 4 months ago
- Python parser for ISAtab, a biological file format for experimental metadata☆16Updated 8 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago