Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomi…
☆20Oct 17, 2018Updated 7 years ago
Alternatives and similar repositories for Risa
Users that are interested in Risa are comparing it to the libraries listed below
Sorting:
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆13Updated this week
- R Interface to the ClassyFire REST API☆12Feb 21, 2025Updated last year
- data processing for MS-based metabolomics☆15Nov 10, 2024Updated last year
- Core Utils for Mass Spectrometry Data☆17Dec 15, 2025Updated 2 months ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated last year
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Jan 21, 2021Updated 5 years ago
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆45Apr 1, 2025Updated 11 months ago
- R Interface to the Metabolights REST API☆11Aug 19, 2025Updated 6 months ago
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆12Sep 3, 2024Updated last year
- Metabolomics experimental design, sample metadata configuration, and sample data acquisition.☆11Jun 28, 2018Updated 7 years ago
- ☆38Jan 14, 2026Updated last month
- QC systems for metabolomics studies☆11Sep 17, 2025Updated 5 months ago
- Metabolomics Tools for Galaxy☆21Nov 22, 2016Updated 9 years ago
- ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Magui…☆40Mar 23, 2023Updated 2 years ago
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Updated this week
- Python parser for ISAtab, a biological file format for experimental metadata☆16Nov 24, 2016Updated 9 years ago
- ☆28Nov 30, 2023Updated 2 years ago
- Repository for mzML and the corresponding examples☆34Apr 5, 2024Updated last year
- These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconduc…☆21Aug 7, 2024Updated last year
- Creating and using (chemical) compound databases☆19Jan 28, 2026Updated last month
- Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, …☆15Nov 13, 2018Updated 7 years ago
- Realtime quality control for mass spectrometry data acquisition☆21Nov 17, 2025Updated 3 months ago
- BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)☆19May 12, 2023Updated 2 years ago
- metabolite identification R-package for metabolomic high-resolution LC-MS datasets.☆16Apr 19, 2017Updated 8 years ago
- OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.☆42Jan 8, 2024Updated 2 years ago
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- A collection of common mz values found in mass spectrometry.☆20Jun 13, 2024Updated last year
- Interactive software to analyze and browse mass spectrometry data☆21Jul 3, 2025Updated 7 months ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆25Jun 3, 2025Updated 8 months ago
- Goslin is the Grammar on succinct lipid nomenclature.☆12Nov 20, 2025Updated 3 months ago
- ☆11Feb 15, 2026Updated 2 weeks ago
- Single sample pathway analysis tools for omics data☆13Nov 9, 2024Updated last year
- High-performance sparse data representation and manipulation in R☆11Dec 16, 2025Updated 2 months ago
- OpenBabel wrapper package for R☆10Feb 17, 2026Updated last week
- ☆12Jan 16, 2025Updated last year
- On-instrument and post-acquisition targeted feature extraction☆13Sep 27, 2025Updated 5 months ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆11May 6, 2025Updated 9 months ago
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…☆11Feb 21, 2026Updated last week