☆27Sep 2, 2026Updated 2 weeks ago
Alternatives and similar repositories for Perturbgen
Users that are interested in Perturbgen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Jul 15, 2026Updated 2 months ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆39Mar 1, 2026Updated 6 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆68Updated this week
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- ☆13Sep 3, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆27Jul 3, 2026Updated 2 months ago
- ☆23Jan 6, 2026Updated 8 months ago
- ☆35Sep 7, 2026Updated last week
- ☆15Jul 8, 2022Updated 4 years ago
- ☆23Apr 30, 2025Updated last year
- Reproducible analyses for the NicheCompass manuscript☆14Updated this week
- Python playground for cell-type-specific biology☆14Aug 25, 2026Updated 3 weeks ago
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆28Mar 20, 2026Updated 5 months ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆42Jun 8, 2026Updated 3 months ago
- Nextflow pipeline to convert BAM to FASTQ, align, perform QC, assess targeted coverage, call gSNP, call sSNV, call mtSNV, call SVs, call …☆21Nov 24, 2025Updated 9 months ago
- parallel differential expression for single-cell perturbation sequencing☆31Aug 26, 2026Updated 3 weeks ago
- Single-Cell (Perturbation) Model Library☆129Jul 27, 2026Updated last month
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆20Apr 16, 2026Updated 5 months ago
- Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX☆20Updated this week
- End-to-end analysis of spatial multi-omics data☆125Updated this week
- ☆21Aug 17, 2026Updated last month
- ☆68Sep 13, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆17Jan 30, 2026Updated 7 months ago
- ☆14Feb 21, 2023Updated 3 years ago
- ☆11Aug 21, 2024Updated 2 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆18Feb 23, 2026Updated 6 months ago
- Fairness in single-cell data☆21Mar 25, 2026Updated 5 months ago
- Benchmark for agentic single cell data analysis☆35Jun 10, 2026Updated 3 months ago
- ☆69Apr 22, 2026Updated 4 months ago
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆17Feb 12, 2026Updated 7 months ago
- ☆28Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- Course of Machine Learning for Biomedical Data -TECNUN University of Navarra☆12Apr 21, 2026Updated 4 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Aug 10, 2023Updated 3 years ago
- Bayesian Sparse Additive Perturbation Regression, code and simulations☆17Apr 29, 2025Updated last year
- ☆46Nov 26, 2025Updated 9 months ago
- Custom code for processing Parse Bio snRNA-seq data generated by the Mortazavi lab at UCI☆22Oct 5, 2025Updated 11 months ago