teepean / BAM-Analysis-Kit
☆18Updated 2 years ago
Alternatives and similar repositories for BAM-Analysis-Kit:
Users that are interested in BAM-Analysis-Kit are comparing it to the libraries listed below
- The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource☆42Updated 5 years ago
- Same species annotation lift over pipeline.☆96Updated last year
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Detecting contamination in NGS data and multi-species analysis☆67Updated 2 months ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- Ancestry and Kinship Tools☆70Updated 2 years ago
- Imputation-beagle-tutorial☆32Updated 2 years ago
- Automatically exported from code.google.com/p/ea-utils☆95Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 4 years ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆79Updated 3 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆53Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆51Updated 4 years ago
- Error correction for Illumina RNA-seq reads☆64Updated 10 months ago
- Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data☆24Updated 3 months ago
- A tool for profiling long STRs from short reads☆93Updated 3 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆122Updated 11 months ago
- *UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for curr…☆32Updated 9 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 weeks ago
- Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi☆20Updated 2 years ago
- Jasmine: SV Merging Across Samples☆190Updated 3 weeks ago
- iTAK☆38Updated 7 months ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆142Updated 8 years ago
- Tools for early stage alignment file processing☆93Updated 5 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 2 months ago
- PHAST☆71Updated last month
- Graph realignment tools for structural variants☆156Updated 2 years ago