teepean / BAM-Analysis-Kit
☆18Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for BAM-Analysis-Kit
- The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource☆42Updated 5 years ago
- Ancestry and Kinship Tools☆70Updated 2 years ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆75Updated last month
- Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data☆23Updated last month
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆103Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆53Updated last year
- VCF-kit: Assorted utilities for the variant call format☆123Updated 3 months ago
- R package designed to simplify structural variant analysis☆70Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year
- processing illumina SNP arrays☆19Updated 7 years ago
- Powerful statistics for VCF files☆64Updated last year
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 4 years ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆60Updated last year
- ☆36Updated 7 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- BISulfite-seq CUI Toolkit☆63Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 3 months ago
- CN-Learn☆29Updated 4 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆77Updated 3 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 3 years ago
- Comprehensive benchmark of structural variant callers☆44Updated 3 years ago
- Tools to work with GWAS-VCF summary statistics files☆105Updated last month
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 4 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆55Updated 3 years ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆28Updated 5 months ago
- QDNAseq package for Bioconductor☆48Updated 3 months ago