tdsmith / ijroiLinks
Reads ImageJ ROI files into numpy arrays.
☆14Updated 6 years ago
Alternatives and similar repositories for ijroi
Users that are interested in ijroi are comparing it to the libraries listed below
Sorting:
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 6 years ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Updated 3 weeks ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Updated 2 months ago
- Read and write ImageJ ROI format.☆84Updated last week
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆64Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- A napari plugin for making animations☆95Updated last week
- ilastik-shell, applets, and workflows to string them together.☆388Updated this week
- Python tools for ImageJ☆13Updated 4 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated 3 weeks ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year
- Read and write life sciences file formats☆142Updated 7 months ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆159Updated 2 weeks ago
- Tools for distributed alignment of massive images☆92Updated this week
- website for the napari image viewer☆47Updated this week
- StarDist plugin for napari☆38Updated last year
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆25Updated 3 years ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Updated last year
- GPU-accelerated general purpose image processing and image analysis in napari☆36Updated 9 months ago
- Lectures for a napari training course☆50Updated 2 years ago
- Open source Python library for building bioimage analysis pipelines☆188Updated last week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 3 months ago
- ☆51Updated 9 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated 3 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year