Alternatives and similar repositories for misic

Users that are interested in misic are comparing it to the libraries listed below

• haesleinhuepf / devbio-napari
  ☆50Updated last month
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated last week
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆32Updated 3 years ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 10 months ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 8 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 8 months ago
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆37Updated 3 weeks ago
• maweigert / spotipy
  ☆12Updated last year
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated this week
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆47Updated 5 months ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆87Updated this week
• kwolbachia / Visualization_toolset
  Imagej toolset to ease hyperstacks visualization and handling
  ☆22Updated 8 months ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆45Updated 3 months ago
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆62Updated last year
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆18Updated last year
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆80Updated 2 months ago
• peng-lab / BaSiCPy
  ☆81Updated 3 months ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆88Updated this week
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆31Updated last month
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆36Updated 11 months ago
• True-North-Intelligent-Algorithms / notebooks-and-napari-widgets-for-dl
  A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
  ☆15Updated 2 months ago
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆40Updated 2 months ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆50Updated last month
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆56Updated 4 months ago
• Michael-shannon / cellPLATO
  The 2023 version of cellPLATO
  ☆15Updated 7 months ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆65Updated last year
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 7 months ago
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆52Updated 3 weeks ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 8 months ago