pswapnesh / misic
segmentation of rod-shaped bacteria
☆15Updated last year
Related projects ⓘ
Alternatives and complementary repositories for misic
- ☆43Updated 3 weeks ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆46Updated 8 months ago
- StarDist plugin for napari☆36Updated 2 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated this week
- Lectures for a napari training course☆50Updated last year
- ☆12Updated 6 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated last week
- Track and lineage visualization with btrack and Napari☆45Updated 2 weeks ago
- A napari plugin for clustering objects according to their properties.☆80Updated last week
- The 2023 version of cellPLATO☆12Updated 2 months ago
- Browse your OMERO database from within napari.☆33Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆47Updated 2 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆47Updated last month
- Toolbox for the analysis of smFISH images.☆57Updated last year
- Accurate and efficient spot detection for microscopy data☆57Updated this week
- Multiple file format reading directly into napari using pure Python☆33Updated 3 months ago
- Automated mitochondrial segmentation and tracking.☆27Updated 3 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆20Updated 3 weeks ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆53Updated last week
- Deconvolution of widefield microscopy images and generation of point spread functions☆42Updated 2 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆28Updated this week
- Creating figures and animations for multi-channel images with a focus on microscopy.☆66Updated 2 years ago
- Particle tracking by solving linear assignment problem.☆49Updated last week
- ☆66Updated 4 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆54Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last month
- Command-line client for Fractal☆45Updated this week
- A Board Game to teach co-localization analysis☆12Updated last week
- Main tasks for the Fractal analytics platform☆14Updated this week