Alternatives and similar repositories for ButchR

Users that are interested in ButchR are comparing it to the libraries listed below

• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆47Updated 2 years ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆32Updated 3 years ago
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆46Updated 3 months ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆79Updated 2 months ago
• genesofeve / projectR
  ☆63Updated 10 months ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆62Updated last year
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆57Updated last week
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆31Updated last year
• neurogenomics / orthogene
  🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…
  ☆51Updated 2 weeks ago
• meyer-lab-cshl / R-data-visualisation-course
  ☆11Updated 5 months ago
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 3 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• greenelab / ccc
  ☆23Updated last year
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆28Updated 2 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆58Updated last year
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 4 years ago
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆35Updated 2 months ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆29Updated 4 years ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆28Updated 3 years ago
• limfuxing / ruvIIInb
  This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…
  ☆18Updated last year
• FredPont / spatial
  Single-Cell Spatial Explorer
  ☆15Updated 2 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆56Updated last week
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆97Updated last week
• fmicompbio / eisaR
  Exon-Intron Split Analysis (EISA) in R
  ☆17Updated 3 months ago
• niaid / dsb
  Normalize CITEseq Data
  ☆67Updated 3 months ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆44Updated 5 years ago
• jyyulab / SJARACNe
  Scalable Tool for Gene Network Reverse Engineering
  ☆25Updated 3 months ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆33Updated 5 months ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆65Updated last week
• YosefLab / ImpulseDE2
  ☆42Updated 3 years ago