Alternatives and similar repositories for Roma

Users that are interested in Roma are comparing it to the libraries listed below

• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated 4 months ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• constantAmateur / cellSignalAnalysis
  Identify major cellular signals in bulk transcriptomes
  ☆11Updated 3 years ago
• hukai916 / scATACpipe
  ☆27Updated 10 months ago
• sysbio-curie / PROFILE
  Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper
  ☆11Updated 2 years ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated 3 months ago
• ding-lab / somaticwrapper
  Detect somatic variants from tumor and normal WGS/WXS data
  ☆19Updated 3 months ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆58Updated 4 years ago
• jianhong / ChIPpeakAnno
  ☆13Updated last month
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆43Updated 5 years ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 3 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆51Updated 10 months ago
• raphael-group / hierarchical-hotnet
  Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.
  ☆38Updated 5 years ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆48Updated 2 years ago
• lcmmichielsen / scHPL
  ☆35Updated 5 months ago
• saezlab / CellNOptR
  Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
  ☆12Updated last year
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆27Updated last year
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆29Updated 5 years ago
• mbasugit / Imputation
  ☆10Updated 4 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆25Updated last year
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆35Updated 4 years ago
• epurdom / cobolt
  A Python package for jointly analyzing multimodal single-cell sequencing data
  ☆24Updated 7 months ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆37Updated 3 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• jianhong / motifStack
  Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
  ☆17Updated 4 months ago
• bzhanglab / WebGestaltR
  R package for WebGestalt
  ☆37Updated 4 months ago
• jtleek / svaseq
  Analysis for svaseq paper
  ☆19Updated 11 years ago