sysbio-curie / RomaLinks
Representation of Module Activity
☆10Updated 8 years ago
Alternatives and similar repositories for Roma
Users that are interested in Roma are comparing it to the libraries listed below
Sorting:
- Identify major cellular signals in bulk transcriptomes☆11Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 2 weeks ago
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Updated last week
- ☆19Updated 3 years ago
- ☆13Updated last month
- ☆27Updated last year
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 6 months ago
- Fast motif matching in R☆46Updated last year
- A Python package for jointly analyzing multimodal single-cell sequencing data☆24Updated 10 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆18Updated 5 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆26Updated 7 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆36Updated 4 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆61Updated 5 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- University of Cambridge PhD thesis☆16Updated 4 years ago
- ☆82Updated 2 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated last week
- A continually expanding collection of RNA-seq tools☆53Updated 2 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated last month
- Scalable Tool for Gene Network Reverse Engineering☆25Updated last month
- R package for the analysis of single-cell immune repertoires☆43Updated 10 months ago
- R/Bioconductor package for working with 10x scATACseq data☆42Updated 2 years ago
- ☆11Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 6 years ago