BenjaminDoran / unidipLinks
Python port of the Unidip clustering algorithm from: http://www.kdd.org/kdd2016/subtopic/view/skinny-dip-clustering-in-a-sea-of-noise
☆37Updated 2 years ago
Alternatives and similar repositories for unidip
Users that are interested in unidip are comparing it to the libraries listed below
Sorting:
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 4 years ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 3 weeks ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.☆40Updated last month
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Updated 5 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆102Updated last week
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆106Updated 6 years ago
- ☆33Updated 4 years ago
- "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.☆118Updated 2 years ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Updated 8 years ago
- A python library for generating a clustered heatmap with dendrograms.☆34Updated 3 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- Subpopulation detection in high-dimensional single-cell data☆71Updated 5 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- ECCB2021 tutorial: Inside the ‘Black Box’: Explainable Deep Learning Models For Image and Sequence Classification☆10Updated 4 years ago
- Code for the paper on t-SNE with variable degree of freedom☆24Updated 5 years ago
- Fisher exact test for mxn contingency table in python☆38Updated last year
- Bioinformatics in Python☆58Updated last year
- ☆100Updated last year
- ☆42Updated last year
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Updated 5 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 3 years ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆33Updated 3 years ago
- A flexible version of CorEx developed for bio-data challenges that handles missing data, continuous/discrete variables, multi-CPU, overla…☆142Updated 4 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated last month