BenjaminDoran / unidipLinks
Python port of the Unidip clustering algorithm from: http://www.kdd.org/kdd2016/subtopic/view/skinny-dip-clustering-in-a-sea-of-noise
☆37Updated 2 years ago
Alternatives and similar repositories for unidip
Users that are interested in unidip are comparing it to the libraries listed below
Sorting:
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆41Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.☆118Updated 2 years ago
- Bioinformatics in Python☆58Updated last year
- Systematically learn and evaluate manifolds from high-dimensional data☆104Updated 2 months ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆105Updated 6 years ago
- Parallel opt-SNE implementation with Python wrapper☆38Updated 3 years ago
- Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.☆41Updated 4 months ago
- Tools for building and manipulating graphs in Python☆46Updated last week
- A python library for generating a clustered heatmap with dendrograms.☆34Updated 3 years ago
- Contrastive PCA☆231Updated 2 months ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆71Updated 2 months ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- Subpopulation detection in high-dimensional single-cell data☆73Updated 5 years ago
- ECCB2021 tutorial: Inside the ‘Black Box’: Explainable Deep Learning Models For Image and Sequence Classification☆10Updated 4 years ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Updated 8 years ago
- The Clustergrammer interactive Jupyter notebook widget☆47Updated 3 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 8 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- A tool for generating heatmaps from hierarchically clustered data.☆40Updated 7 years ago
- Fast hierarchical clustering routines for R and Python.☆154Updated last week
- Creating multi-resolution embeddings and clusters from high dimensional data☆57Updated last year
- ☆33Updated 4 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Code for the paper on t-SNE with variable degree of freedom☆25Updated 5 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- A flexible version of CorEx developed for bio-data challenges that handles missing data, continuous/discrete variables, multi-CPU, overla…☆143Updated 4 years ago