BenjaminDoran / unidip
Python port of the Unidip clustering algorithm from: http://www.kdd.org/kdd2016/subtopic/view/skinny-dip-clustering-in-a-sea-of-noise
☆36Updated last year
Alternatives and similar repositories for unidip:
Users that are interested in unidip are comparing it to the libraries listed below
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 3 years ago
- A library to simulate single-cell data☆2Updated 2 years ago
- Python Wrapper for FIt-SNE☆45Updated 3 years ago
- Here we address the global structure preservation by tSNE and UMAP☆48Updated 5 years ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆32Updated 2 years ago
- Statistical tests for evaluating unimodality☆18Updated 6 years ago
- ☆61Updated 3 months ago
- Fast hierarchical clustering routines for R and Python.☆144Updated last week
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- Bioinformatics in Python☆58Updated 10 months ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Updated 5 years ago
- Explaining dimensionality results using SHAP values☆54Updated 3 months ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆51Updated 6 years ago
- A tool for generating heatmaps from hierarchically clustered data.☆40Updated 6 years ago
- ☆11Updated 6 months ago
- Fit generalized linear models in python.☆27Updated 2 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 9 months ago
- A spectral method for assessing and combining multiple data visualizations☆49Updated last year
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- A python library for generating a clustered heatmap with dendrograms.☆32Updated 3 years ago
- "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.☆114Updated 2 years ago
- Python/C implementation of Hartigan & Hartigan's dip test, based on Martin Maechler's R package☆28Updated 2 years ago
- Denoising Autoencoders for Phenotype Stratification☆41Updated 6 years ago
- CANAlization: Control & Redundancy in Boolean Networks☆23Updated 8 months ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 2 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆97Updated last year
- Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B☆16Updated 3 years ago