imjoy-team / example-pluginsLinks
☆15Updated 5 years ago
Alternatives and similar repositories for example-plugins
Users that are interested in example-plugins are comparing it to the libraries listed below
Sorting:
- ☆15Updated last year
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆21Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 2 months ago
- RAnking Markers for CEll Segmentation☆12Updated 3 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆79Updated 4 months ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-vali…☆16Updated last year
- Implementation of multiplex Leiden for analysis of spatial omics data☆14Updated 2 weeks ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 7 months ago
- ☆11Updated 6 years ago
- Framework for image and flow cytometry analysis☆32Updated 2 months ago
- ☆21Updated last week
- Codebase for training the SubCell models☆17Updated 2 weeks ago
- ☆24Updated 2 years ago
- collection of mass spectrometry imaging workflows☆20Updated this week
- Python package to export tensorflow models as DeepImageJ bundled models☆17Updated 3 years ago
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- ☆18Updated 2 years ago
- A Python package for single-cell spatial image analysis.☆18Updated 2 years ago
- Microsopic Image Analyzer (MIA)☆28Updated 4 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆60Updated last year
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- Tool to create images and configuration files for Minerva-Story☆16Updated 2 weeks ago
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆20Updated last month
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- ☆22Updated 7 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 6 months ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆12Updated 2 months ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago