NikolayOskolkov / HowUMAPWorksLinks
Here I explain the math behind UMAP and show how to program it from scratch in Python
☆38Updated 4 years ago
Alternatives and similar repositories for HowUMAPWorks
Users that are interested in HowUMAPWorks are comparing it to the libraries listed below
Sorting:
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- The art of using t-SNE for single-cell transcriptomics☆129Updated 11 months ago
- Latent spaces for single cells☆21Updated last year
- Tools for building and manipulating graphs in Python☆43Updated last week
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆45Updated 5 years ago
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆15Updated 2 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆20Updated 2 years ago
- ☆17Updated 5 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆102Updated 2 weeks ago
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆150Updated 4 years ago
- Density-preserving data visualization tools den-SNE and densMAP☆115Updated 4 years ago
- Contrastive PCA☆227Updated 3 weeks ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated 2 years ago
- Categorical Variational Autoencoders☆24Updated 3 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆56Updated last year
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 6 years ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Sequence data label generation and ingestion into deep learning models☆12Updated 3 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 3 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago
- ☆16Updated 3 years ago
- Disease pathways in the human interactome☆23Updated 7 years ago
- Integrative orthogonal non-negative matrix factorization☆32Updated 6 years ago
- ☆11Updated 8 years ago