stephens999 / scat

Related projects ⓘ

Alternatives and complementary repositories for scat

• cooplab / Popgen_EVE102_2012
  Pdfs of slides from 2018 popgen course
  ☆35Updated 5 years ago
• standard-aaron / palm
  Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
  ☆16Updated 3 years ago
• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆26Updated 4 months ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• andrewkern / popGenMachineLearningExamples
  simple examples of using supervised machine learning for population genetics inference
  ☆38Updated 7 years ago
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆77Updated last year
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆22Updated last week
• szpiech / selscan
  Haplotype based scans for selection
  ☆114Updated 3 weeks ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆84Updated 2 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆32Updated 11 months ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆58Updated last year
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆32Updated 3 years ago
• syntheke / bayesR
  Bayesian hierarchical model for complex trait analysis
  ☆44Updated 8 months ago
• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆48Updated 10 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆38Updated 4 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆53Updated last week
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆29Updated 6 months ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆30Updated 7 months ago
• smozaffari / CommitteeMeetingReports
  Committee Meeting Reports - LaTeX
  ☆10Updated 6 years ago
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆50Updated 2 months ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated last year
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆41Updated last week
• MyersGroup / relate
  Software for estimating genome-wide genealogies for thousands of samples
  ☆28Updated last month
• Yale-EEB723 / syllabus
  ☆21Updated 5 years ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆52Updated 6 months ago
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆42Updated last month
• popsim-consortium / analysis
  Analysis of inference methods on standard population models
  ☆24Updated 2 years ago
• CshlSiepelLab / arg-selection
  ARG-based inference of selection using deep learning
  ☆16Updated last year
• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 3 years ago