stephens999 / scat
SCAT software for "Smoothed and Continuous Assignment Tests"
☆28Updated last year
Alternatives and similar repositories for scat:
Users that are interested in scat are comparing it to the libraries listed below
- Pdfs of slides from 2018 popgen course☆36Updated 6 years ago
- simple examples of using supervised machine learning for population genetics inference☆38Updated 7 years ago
- Haplotype based scans for selection☆120Updated last week
- Shiny apps for teaching Population Genetics☆62Updated 2 years ago
- R package for pedigree inference based on SNP data☆26Updated 8 months ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated 3 weeks ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- ☆20Updated 4 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆49Updated last year
- RFMIX - Local Ancestry and Admixture Inference Version 2☆82Updated 2 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated 10 months ago
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- a bash pipeline for RAD sequencing☆53Updated 3 weeks ago
- Population and Evolutionary Genetics Analysis System☆29Updated 7 months ago
- ☆43Updated last year
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆56Updated 3 months ago
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆34Updated last year
- Estimate recombination rates from population genetic data☆63Updated 4 years ago
- feature-based deep learning for the identification of selective sweeps☆51Updated 3 weeks ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- Analysis of inference methods on standard population models☆25Updated 3 years ago
- Bayesian hierarchical model for complex trait analysis☆44Updated last year
- Population genetic simulations in R 🌍☆56Updated this week
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆79Updated this week
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆44Updated 6 months ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆84Updated 3 years ago
- R code to compute the Singleton Density Score (SDS)☆28Updated 8 years ago