defleury / Schmidt_et_al_2016_community_similarityLinks
Analysis code for a manuscript on community similarity computation
☆14Updated 6 years ago
Alternatives and similar repositories for Schmidt_et_al_2016_community_similarity
Users that are interested in Schmidt_et_al_2016_community_similarity are comparing it to the libraries listed below
Sorting:
- Utilities for community ecology analysis☆19Updated 4 years ago
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- JAMP - Just Another Metabarcoding Pipeline☆36Updated 3 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated last year
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆16Updated 5 months ago
- Pairwise multilevel comparison using adonis☆77Updated 2 years ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- Look Up Guild Information for Fungi in R☆21Updated 3 months ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆22Updated 2 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆19Updated 6 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Updated 8 months ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 3 years ago
- BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts☆68Updated 3 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 4 months ago
- dada2 formatted nifH database☆12Updated last year
- Normalized Stochasticity Ratio in community assembly☆26Updated 8 months ago
- Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)☆12Updated 3 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Examples of application of comparative methods in R☆59Updated 2 years ago
- ☆12Updated last year
- R package and web app for spatial visualisation of admixture on a projected map☆44Updated 3 months ago
- ☆76Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- Miscellaneous functions for metagenomic analysis.☆50Updated last month
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆81Updated 5 months ago
- FUNGuild: parsing OTUs into functional guilds☆119Updated last year
- Species richness with high diversity☆68Updated 3 months ago