defleury / Schmidt_et_al_2016_community_similarity
Analysis code for a manuscript on community similarity computation
☆14Updated 6 years ago
Alternatives and similar repositories for Schmidt_et_al_2016_community_similarity:
Users that are interested in Schmidt_et_al_2016_community_similarity are comparing it to the libraries listed below
- Utilities for community ecology analysis☆18Updated 4 years ago
- Various functions for analysis of microbial community data☆43Updated 2 years ago
- dada2 formatted nifH database☆11Updated 11 months ago
- JAMP - Just Another Metabarcoding Pipeline☆34Updated 3 years ago
- ☆23Updated 6 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 7 years ago
- Repo for a Microbiome Protocol☆10Updated 6 years ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 3 years ago
- Look Up Guild Information for Fungi in R☆21Updated 3 weeks ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆19Updated 6 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆14Updated 2 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last month
- Normalized Stochasticity Ratio in community assembly☆24Updated 5 months ago
- Pairwise multilevel comparison using adonis☆74Updated last year
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- ☆12Updated last year
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆10Updated last month
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆31Updated 2 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- ☆8Updated 5 years ago
- ☆20Updated 2 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 9 months ago
- ☆36Updated 3 weeks ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated last year
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆22Updated 2 years ago
- ☆13Updated 3 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago