Alternatives and similar repositories for causeSims

Users that are interested in causeSims are comparing it to the libraries listed below

• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 4 years ago
• hbliu / Kidney_Epi_Pri
  Kidney Epigenome and Transcriptome-based multi-stage Prioritization
  ☆17Updated 3 years ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆14Updated 3 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆20Updated 2 years ago
• MRCIEU / PhenoSpD
  ☆18Updated 8 years ago
• Nealelab / UKBB_ldsc_scripts
  Scripts used for generating Neale Lab UKB results
  ☆21Updated 3 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆20Updated 10 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆19Updated last year
• lcrawlab / i-LDSC
  Code and simulations using interaction-LD score regression
  ☆13Updated last year
• Stahl-Lab-MSSM / coloc2
  Upgrade to coloc
  ☆13Updated 7 years ago
• explodecomputer / random-metal
  Adding random effects model to the METAL software
  ☆15Updated 2 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆24Updated 7 years ago
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆19Updated 2 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 6 years ago
• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated 4 months ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆27Updated 3 months ago
• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 5 years ago
• astheeggeggs / BipEx
  ☆10Updated last year
• jrs95 / gassocplot2
  Regional association plots
  ☆24Updated last year
• MRCIEU / epigraphdb-r
  R package for epigraphdb
  ☆28Updated last year
• xqwen / ptwas
  ☆18Updated 4 years ago
• SUwonglab / rss-net
  RSS-NET: Regression with Summary Statistics exploiting Network Topology
  ☆19Updated 9 months ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆31Updated last year
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆35Updated 5 years ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆27Updated 4 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆21Updated 5 months ago
• HLee-Six / colon_microbiopsies
  Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"
  ☆11Updated 4 years ago