Jhsmit / ColiCoords
Single-cell fluorescence microscopy data analysis
☆26Updated 3 years ago
Alternatives and similar repositories for ColiCoords:
Users that are interested in ColiCoords are comparing it to the libraries listed below
- ExTrack MLE for diffusive noisy single-particle tracks☆12Updated this week
- Python nd2 reader based on the ND2 SDK☆16Updated 2 years ago
- ☆38Updated 5 months ago
- The Fluorescent Protein Database☆65Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated 2 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆45Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆48Updated 2 months ago
- An Ilastik-like interactive pixel classifier.☆16Updated 4 months ago
- A platform for compiling, analyzing, and exploring tracking data☆42Updated last week
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- An introduction to bioimage analysis - http://bioimagebook.github.io☆64Updated 5 months ago
- Lectures for a napari training course☆50Updated last year
- ☆44Updated 3 months ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated 6 months ago
- ☆30Updated 2 years ago
- Track and lineage visualization with btrack and Napari☆44Updated 2 months ago
- Resources for teaching/preparing to teach bioimage analysis☆51Updated this week
- Guides and code for 3D nuclear instance segmentation☆20Updated last week
- Multiple file format reading directly into napari using pure Python☆34Updated 5 months ago
- native Python dataclasses for the OME data model☆55Updated last week
- File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and im…☆20Updated last week
- Detection of Molecules plugin for ImageJ, Utrecht University☆15Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆81Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆72Updated 3 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- Public releases of TARDIS☆11Updated 11 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆74Updated last week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆49Updated 3 months ago
- Browse your OMERO database from within napari.☆35Updated this week