Jhsmit / ColiCoordsLinks
Single-cell fluorescence microscopy data analysis
☆26Updated 4 years ago
Alternatives and similar repositories for ColiCoords
Users that are interested in ColiCoords are comparing it to the libraries listed below
Sorting:
- Python nd2 reader based on the ND2 SDK☆17Updated 3 years ago
- The Fluorescent Protein Database☆70Updated last week
- ExTrack MLE for diffusive noisy single-particle tracks☆14Updated 3 weeks ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 7 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆215Updated 7 months ago
- Python package for processing image-based profiling data☆121Updated 2 weeks ago
- An Ilastik-like interactive pixel classifier.☆16Updated 11 months ago
- Lectures for a napari training course☆50Updated last year
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- ☆39Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆82Updated last week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated this week
- Discover, install, and share napari plugins☆52Updated 2 months ago
- Community-contributed and experimental CellProfiler modules.☆68Updated last week
- ☆32Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 10 months ago
- CellProfiler tutorial pipelines and images☆93Updated 3 weeks ago
- GPU-accelerated image processing for everyone☆54Updated last year
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated 3 weeks ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆143Updated 2 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 3 weeks ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆72Updated 2 weeks ago
- An AFM image analysis program to batch process data and obtain statistics from images☆75Updated this week
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 8 months ago
- A parser to read .imzML files with python☆43Updated 9 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆149Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 10 months ago
- File format for 96-well plate layouts.☆23Updated last year