Jhsmit / ColiCoordsLinks
Single-cell fluorescence microscopy data analysis
☆26Updated 3 years ago
Alternatives and similar repositories for ColiCoords
Users that are interested in ColiCoords are comparing it to the libraries listed below
Sorting:
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 5 months ago
- Python nd2 reader based on the ND2 SDK☆17Updated 3 years ago
- Your Personal Assistant in Computational Bioimaging.☆42Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- ExTrack MLE for diffusive noisy single-particle tracks☆13Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- An Ilastik-like interactive pixel classifier.☆16Updated 9 months ago
- ☆29Updated last year
- The Fluorescent Protein Database☆68Updated this week
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated last year
- Lectures for a napari training course☆50Updated last year
- ☆39Updated 11 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- CellProfiler tutorial pipelines and images☆93Updated last month
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 7 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆140Updated 2 weeks ago
- native Python dataclasses for the OME data model☆56Updated 3 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- Public releases of TARDIS☆11Updated last year
- Multiple file format reading directly into napari using pure Python☆36Updated 11 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- ☆50Updated last month
- File format for 96-well plate layouts.☆23Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last month
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- ☆31Updated 3 years ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆215Updated 5 months ago
- A platform for compiling, analyzing, and exploring tracking data☆45Updated 3 months ago