Alternatives and similar repositories for ColiCoords

Users that are interested in ColiCoords are comparing it to the libraries listed below

• tlambert03 / FPbase
  The Fluorescent Protein Database
  ☆71Updated this week
• soft-matter / pims_nd2
  Python nd2 reader based on the ND2 SDK
  ☆17Updated 3 years ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆124Updated last week
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆47Updated 8 months ago
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated last year
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆220Updated 8 months ago
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆98Updated 2 years ago
• aafkegros / Blender_for_Biologists_2023
  ☆39Updated last year
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆63Updated 2 years ago
• HenriquesLab / DeepBacs
  ☆31Updated 3 years ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆94Updated 2 months ago
• vanTeeffelenLab / ExTrack
  ExTrack MLE for diffusive noisy single-particle tracks
  ☆14Updated 3 weeks ago
• 4DNucleome / PartSeg
  Tool for segmentation in bioimaging
  ☆35Updated last week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated this week
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆86Updated 3 weeks ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆68Updated last week
• tlambert03 / nd2
  Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
  ☆69Updated this week
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆46Updated last week
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆23Updated last year
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆141Updated 3 months ago
• AndrewGYork / high_na_single_objective_lightsheet
  Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…
  ☆22Updated last year
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆148Updated last week
• AFM-SPM / TopoStats
  An AFM image analysis program to batch process data and obtain statistics from images
  ☆75Updated last week
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆73Updated last month
• Immunodynamics-Engel-Lab / msiflow
  collection of mass spectrometry imaging workflows
  ☆15Updated 4 months ago
• zeiss-microscopy / OAD
  Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…
  ☆150Updated last week
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated 2 years ago
• clij / clij2
  GPU-accelerated image processing for everyone
  ☆54Updated last year
• COBA-NIH / MicroscopyForBeginnersReferenceGuide
  A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
  ☆28Updated 2 months ago