Jhsmit / ColiCoordsLinks
Single-cell fluorescence microscopy data analysis
☆26Updated 4 years ago
Alternatives and similar repositories for ColiCoords
Users that are interested in ColiCoords are comparing it to the libraries listed below
Sorting:
- The Fluorescent Protein Database☆75Updated this week
- Python nd2 reader based on the ND2 SDK☆17Updated 3 years ago
- Python package for processing image-based profiling data☆127Updated 2 weeks ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆220Updated 10 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- ExTrack MLE for diffusive noisy single-particle tracks☆14Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 10 months ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆74Updated 3 months ago
- CellProfiler tutorial pipelines and images☆98Updated 3 weeks ago
- Leica Image Format (LIF) file reader for Python☆37Updated 4 months ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆156Updated last month
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆151Updated last month
- ☆39Updated last year
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆88Updated last week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆171Updated 6 months ago
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- ☆31Updated last week
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated last year
- A collection of tools for painting super-resolution images☆134Updated last week
- Read and write life sciences file formats☆142Updated 5 months ago
- Tool for segmentation in bioimaging☆35Updated last week
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Community-contributed and experimental CellProfiler modules.☆69Updated this week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆156Updated 3 months ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- Fiji's plugin for colocalization analysis☆28Updated 8 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- TrackMate is your buddy for your everyday tracking.☆219Updated 2 weeks ago