Jhsmit / ColiCoords
Single-cell fluorescence microscopy data analysis
☆26Updated 3 years ago
Alternatives and similar repositories for ColiCoords:
Users that are interested in ColiCoords are comparing it to the libraries listed below
- ExTrack MLE for diffusive noisy single-particle tracks☆12Updated last month
- ☆38Updated 6 months ago
- Python nd2 reader based on the ND2 SDK☆16Updated 3 years ago
- An Ilastik-like interactive pixel classifier.☆16Updated 5 months ago
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- ☆30Updated 2 years ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆45Updated last month
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 4 months ago
- The Fluorescent Protein Database☆65Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆51Updated 3 months ago
- Resources for teaching/preparing to teach bioimage analysis☆54Updated this week
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated 7 months ago
- Command-line client for Fractal☆45Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆24Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 3 months ago
- ☆12Updated 3 months ago
- Lectures for a napari training course☆50Updated last year
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- ☆29Updated 10 months ago
- ☆46Updated 3 months ago
- Image registration (alignment) software for large microscopy images☆22Updated last year
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 4 years ago
- native Python dataclasses for the OME data model☆55Updated last week
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- Multiple file format reading directly into napari using pure Python☆35Updated 6 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated last year
- Guides and code for 3D nuclear instance segmentation☆20Updated last month