cdeitrick / LolipopLinks
Muller diagrams excel at visualizing evolutionary dynamics of a population over time. A common use case, and the intended use case during development, describes the abundance and succession of genotypes within a population derived from sequencing data from samples at specified timepoints. This provides a useful method of quickly discerning th…
☆13Updated 5 years ago
Alternatives and similar repositories for Lolipop
Users that are interested in Lolipop are comparing it to the libraries listed below
Sorting:
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Updated 3 weeks ago
- ☆28Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Updated last month
- microbial association network clustering algorithm☆14Updated 2 years ago
- Snakemake workflow management system and CLI generation tool☆63Updated 3 months ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 10 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 9 months ago
- Tools for visualising microbial community amplicon data☆71Updated 3 months ago
- A collection of documented examples using TreeTime☆22Updated 6 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 4 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated 5 months ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- ☆26Updated 2 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 5 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Creating plasmid maps inside ggplot.☆89Updated 5 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Bayesian Inferential Regression for Differential Microbiome Analysis☆23Updated 2 years ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆77Updated this week
- ☆39Updated 2 years ago
- Tutorial on Bayesian phylogenetic analysis☆52Updated 8 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Updated 3 years ago
- A modest re-desing update for the classic FastQC report.☆29Updated 5 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago