Alternatives and similar repositories for AIBSOPT

Users that are interested in AIBSOPT are comparing it to the libraries listed below

• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆17Updated last month
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆16Updated last month
• losonczylab / sima
  Python package for analysis of dynamic fluorescence microscopy data
  ☆101Updated 6 years ago
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆30Updated 8 months ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆52Updated last week
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆54Updated last year
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆60Updated 3 months ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆136Updated 2 weeks ago
• mukamel-lab / CellSort
  This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …
  ☆26Updated 7 years ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• zhoupc / OASIS_matlab
  ☆40Updated 3 years ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated 2 weeks ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated this week
• mesoSPIM / mesoSPIM-control
  Image acquisition software for mesoSPIM light-sheet microscopes.
  ☆43Updated last week
• SystemsResearch / CUBIC_nprot
  Code for the image processing and analysis described our Nature Protocols paper.
  ☆10Updated 10 years ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆45Updated 2 years ago
• fdechaumont / lmt-analysis
  Live Mouse Tracker analysis
  ☆32Updated this week
• kavli-ntnu / MINI2P_toolbox
  The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…
  ☆96Updated last year
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆52Updated this week
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• bkntr / brainways
  Brainways
  ☆21Updated 3 weeks ago
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆46Updated 10 months ago
• BadenLab / LED-Zappelin
  An OpenSource LED stimulator for visual and optogenetics stimulation in combination with 2-photon recording
  ☆31Updated 3 years ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆44Updated 2 weeks ago
• haesleinhuepf / imagejmacromarkdown
  Generate markdown notebooks from ImageJ Macro
  ☆26Updated 4 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated last year
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆17Updated 6 months ago
• nel-lab / FIOLA
  ☆34Updated 4 months ago
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆16Updated last year