Alternatives and similar repositories for AIBSOPT

Users that are interested in AIBSOPT are comparing it to the libraries listed below

• mukamel-lab / CellSort
  This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …
  ☆26Updated 7 years ago
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆31Updated 10 months ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆54Updated 2 weeks ago
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆19Updated last week
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated this week
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆54Updated last year
• owenrandlett / Z-Brain
  Z-Brain Viewer and Analysis Scripts for MAP-Mapping
  ☆24Updated 7 months ago
• kavli-ntnu / MINI2P_toolbox
  The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…
  ☆97Updated 2 years ago
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆47Updated last year
• losonczylab / sima
  Python package for analysis of dynamic fluorescence microscopy data
  ☆103Updated 6 years ago
• BadenLab / LED-Zappelin
  An OpenSource LED stimulator for visual and optogenetics stimulation in combination with 2-photon recording
  ☆32Updated 4 years ago
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆17Updated 2 weeks ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆20Updated 7 years ago
• zhoupc / OASIS_matlab
  ☆41Updated 4 years ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆52Updated last week
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆139Updated 2 weeks ago
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆61Updated 5 months ago
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆54Updated 2 years ago
• hochbaumGroup / HNCcorr
  HNCcorr algorithm for neuron identification in calcium imaging datasets.
  ☆12Updated 2 years ago
• haesleinhuepf / imagejmacromarkdown
  Generate markdown notebooks from ImageJ Macro
  ☆26Updated 4 years ago
• nicost / uScopeControl
  A hub to start the next generation of Microscope Control Software
  ☆58Updated 4 years ago
• bkntr / brainways
  Brainways
  ☆21Updated 2 months ago
• SystemsResearch / CUBIC_nprot
  Code for the image processing and analysis described our Nature Protocols paper.
  ☆10Updated 10 years ago
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago
• fdechaumont / lmt-analysis
  Live Mouse Tracker analysis
  ☆33Updated this week
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆46Updated 2 weeks ago