AllenInstitute / AIBSOPTLinks
Optical projection tomography microscope for isotropic whole-brain imaging
☆16Updated 3 years ago
Alternatives and similar repositories for AIBSOPT
Users that are interested in AIBSOPT are comparing it to the libraries listed below
Sorting:
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 7 years ago
- ImageJ convenience layer for N5☆19Updated 2 months ago
- motion correction☆17Updated 2 years ago
- 3-D imaging visualisation through slicing☆31Updated last year
- A modular package to control stimulation and track behaviour☆46Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated last month
- Segmentation of anatomical structures in a common coordinate space☆35Updated 2 weeks ago
- The framework for quantification of neuronal anatomy☆55Updated last week
- An OpenSource LED stimulator for visual and optogenetics stimulation in combination with 2-photon recording☆32Updated 4 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- Python package for analysis of dynamic fluorescence microscopy data☆103Updated 6 years ago
- Live Mouse Tracker analysis☆34Updated last month
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated last week
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆102Updated 2 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆25Updated 9 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 5 months ago
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- Create 3D/4D animations using a natural language-based syntax☆61Updated 7 months ago
- Browser-based NWB visualization and DANDI exploration☆62Updated last month
- computes intrinsic cell features from intracellular electrophysiology data☆28Updated last month
- Serial-section automated anatomy extension for ScanImage☆17Updated this week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated 2 weeks ago
- CloudReg☆11Updated last year