AllenInstitute / AIBSOPTLinks
Optical projection tomography microscope for isotropic whole-brain imaging
☆16Updated 3 years ago
Alternatives and similar repositories for AIBSOPT
Users that are interested in AIBSOPT are comparing it to the libraries listed below
Sorting:
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 7 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆55Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Segmentation of anatomical structures in a common coordinate space☆34Updated last week
- motion correction☆17Updated 2 years ago
- ImageJ convenience layer for N5☆19Updated last month
- 3-D imaging visualisation through slicing☆31Updated 11 months ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- Python package for analysis of dynamic fluorescence microscopy data☆103Updated 6 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- ☆45Updated 5 years ago
- Serial-section automated anatomy extension for ScanImage☆17Updated last month
- ☆20Updated 7 years ago
- An OpenSource LED stimulator for visual and optogenetics stimulation in combination with 2-photon recording☆32Updated 4 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- Live Mouse Tracker analysis☆33Updated last week
- Automated 3D brain registration with support for multiple species and atlases.☆140Updated last week
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- GPU-based 3D non-rigid volumetric registration☆41Updated 3 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Brainways☆22Updated 3 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- Flow-Registration toolbox for 2P motion compensation☆27Updated 2 months ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆24Updated 8 months ago
- computes intrinsic cell features from intracellular electrophysiology data☆28Updated 2 months ago
- The ImageJ framework for quantification of neuronal anatomy☆53Updated last week
- A Python interface to access neuroanatomical atlases☆167Updated last week
- CloudReg☆11Updated last year
- Calcium Data Extraction and Analysis☆48Updated 3 years ago