Alternatives and similar repositories for CellMagicWand

Users that are interested in CellMagicWand are comparing it to the libraries listed below

• ClearVolume / PyClearVolume
  python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.
  ☆15Updated 8 years ago
• napari / napari.github.io
  website for the napari image viewer
  ☆44Updated last week
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• losonczylab / sima
  Python package for analysis of dynamic fluorescence microscopy data
  ☆101Updated 6 years ago
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆45Updated last year
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆17Updated 2 weeks ago
• mukamel-lab / CellSort
  This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …
  ☆26Updated 7 years ago
• saalfeldlab / render
  Render transformed image tiles
  ☆34Updated this week
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆60Updated 2 months ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• constantinpape / heimdall
  Python based viewer for large mulit-dimensional datasets.
  ☆20Updated 5 years ago
• neuroscales / nifti-zarr
  A draft specification for the nifti-zarr format
  ☆16Updated 4 months ago
• hadim / read-roi
  Read ROI files .zip or .roi generated with ImageJ.
  ☆53Updated 3 years ago
• NIF-au / TissueStack
  Web based Image Viewer developed @ Center for Advanced Imaging [University of Queensland]
  ☆19Updated 2 years ago
• maweigert / spimagine
  GPU accelerated volume rendering / processing in Python
  ☆118Updated 6 years ago
• INCF / Scalable-Brain-Atlas
  Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)
  ☆14Updated 9 years ago
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆30Updated 7 months ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated 2 weeks ago
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆79Updated 7 years ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆55Updated last month
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• owenrandlett / Z-Brain
  Z-Brain Viewer and Analysis Scripts for MAP-Mapping
  ☆22Updated 4 months ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆51Updated last week
• mattbdean / Helium
  A companion website for DataJoint
  ☆10Updated 2 weeks ago
• transformify-plugins / segmentify
  Python image segmentation plugin
  ☆31Updated 4 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆85Updated last week
• ClearVolume / clearvolume
  ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …
  ☆46Updated 6 months ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆22Updated last year
• SwipesForScience / SwipesForScience
  A general purpose citizen science game template for scientific research
  ☆26Updated 2 years ago
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆34Updated last year