Alternatives and similar repositories for UNCALLED

Users that are interested in UNCALLED are comparing it to the libraries listed below

• CDCgov / SARS-CoV-2_Sequencing
  A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
  ☆348Updated 2 years ago
• seq-lang / seq
  A high-performance, Pythonic language for bioinformatics
  ☆704Updated 2 years ago
• stjude / learngenomics.dev
  A guided, intuitive introduction to genomics for software engineers. Curated by the community.
  ☆373Updated 10 months ago
• ababaian / serratus
  Ultra-deep search for novel viruses
  ☆271Updated 2 years ago
• chanzuckerberg / shasta
  [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
  ☆274Updated 2 years ago
• nextstrain / nextclade
  Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
  ☆240Updated last week
• bcgsc / NanoSim
  Nanopore sequence read simulator
  ☆274Updated 4 months ago
• marbl / CHM13
  The complete sequence of a human genome
  ☆969Updated last month
• mentatpsi / OSGenome
  An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
  ☆131Updated last year
• whatshap / whatshap
  Read-based phasing of genomic variants, also called haplotype assembly
  ☆375Updated last month
• cov-lineages / pangolin
  Software package for assigning SARS-CoV-2 genome sequences to global lineages.
  ☆437Updated last month
• Edinburgh-Genome-Foundry / DnaChisel
  A versatile DNA sequence optimizer
  ☆241Updated 2 months ago
• TeamErlich / dna-fountain
  DNA-Fountain
  ☆157Updated last week
• ekimb / rust-mdbg
  minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
  ☆182Updated 10 months ago
• LooseLab / readfish
  CLI tool for flexible and fast adaptive sampling on ONT sequencers
  ☆183Updated 2 months ago
• biowasm / biowasm
  WebAssembly modules for genomics
  ☆252Updated last month
• VGP / vgp-assembly
  VGP repository for the genome assembly working group
  ☆193Updated last month
• sourmash-bio / sourmash
  Quickly search, compare, and analyze genomic and metagenomic data sets.
  ☆512Updated this week
• nanoporetech / pod5-file-format
  Pod5: a high performance file format for nanopore reads.
  ☆152Updated last month
• genometools / genometools
  GenomeTools genome analysis system.
  ☆316Updated last year
• nanopore-wgs-consortium / NA12878
  Data and analysis for NA12878 genome on nanopore
  ☆392Updated 2 years ago
• lbcb-sci / raven
  De novo genome assembler for long uncorrected reads
  ☆223Updated last year
• kishwarshafin / pepper
  PEPPER-Margin-DeepVariant
  ☆250Updated last year
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆292Updated last year
• ncbi / GeneGPT
  Code and data for GeneGPT.
  ☆407Updated 2 months ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆317Updated last year
• pmelsted / bifrost
  Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
  ☆215Updated last year
• bcgsc / abyss
  Assemble large genomes using short reads
  ☆322Updated 3 months ago
• GMOD / jbrowse-components
  Source code for JBrowse 2, a modern React-based genome browser
  ☆247Updated this week
• marbl / Winnowmap
  Long read / genome alignment software
  ☆291Updated 8 months ago