skovaka / UNCALLED
Raw nanopore signal mapper that enables real-time targeted sequencing
☆520Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for UNCALLED
- A high-performance, Pythonic language for bioinformatics☆700Updated last year
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆345Updated last year
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆169Updated 2 months ago
- Code and data for GeneGPT.☆380Updated 9 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Updated 2 years ago
- A versatile DNA sequence optimizer☆222Updated 2 weeks ago
- Nanopore sequence read simulator☆246Updated 2 weeks ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆219Updated this week
- De novo genome assembler for long uncorrected reads☆204Updated last year
- An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies☆121Updated 9 months ago
- Pod5: a high performance file format for nanopore reads.☆139Updated this week
- A guided, intuitive introduction to genomics for software engineers. Curated by the community.☆349Updated 3 months ago
- Ultra-deep search for novel viruses☆259Updated last year
- k-mer based assembly evaluation☆290Updated 4 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆342Updated this week
- Graphical Fragment Assembly (GFA) Format Specification☆198Updated 3 months ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆176Updated 2 months ago
- diploid SNV caller for error-prone reads☆191Updated 6 months ago
- Long read / genome alignment software☆259Updated 2 weeks ago
- software tools for haplotype assembly from sequence data☆207Updated 3 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆275Updated last week
- GenomeTools genome analysis system.☆296Updated 9 months ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆138Updated 2 weeks ago
- Genomics Extension for SQLite☆162Updated 2 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆202Updated 10 months ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆268Updated 4 months ago
- Fast genome analysis from unassembled short reads☆260Updated 7 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆476Updated this week
- Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features☆95Updated last year
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆159Updated last month