Raw nanopore signal mapper that enables real-time targeted sequencing
☆532Mar 5, 2024Updated 2 years ago
Alternatives and similar repositories for UNCALLED
Users that are interested in UNCALLED are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆198Feb 25, 2026Updated 6 months ago
- Read Until client library for Nanopore Sequencing☆108Sep 25, 2024Updated last year
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205May 4, 2023Updated 3 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Aug 26, 2026Updated 3 weeks ago
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Aug 21, 2026Updated 3 weeks ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆130Feb 16, 2024Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- ☆50Nov 7, 2024Updated last year
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- Fast and scalable nanopore adaptive sampling☆37Jun 6, 2023Updated 3 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- Structural variation caller using third generation sequencing☆679Sep 10, 2026Updated last week
- Data and analysis for NA12878 genome on nanopore☆413Nov 22, 2022Updated 3 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆44Jul 7, 2020Updated 6 years ago
- Signal-level algorithms for MinION data☆602Aug 5, 2023Updated 3 years ago
- adapter trimmer for Oxford Nanopore reads☆387May 8, 2024Updated 2 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆436Feb 20, 2026Updated 7 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆244Dec 29, 2023Updated 2 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆527May 20, 2026Updated 4 months ago
- Long read / genome alignment software☆331Dec 16, 2025Updated 9 months ago
- Training models for basecalling Oxford Nanopore reads☆116Jan 13, 2022Updated 4 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- ☆84Jan 6, 2025Updated last year
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 7 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆290Dec 29, 2025Updated 8 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Aug 27, 2026Updated 3 weeks ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- Methylation/modified base calling separated from basecalling.☆188Sep 17, 2024Updated 2 years ago
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- ☆52Jun 25, 2024Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago