Alternatives and similar repositories for UNCALLED

Users that are interested in UNCALLED are comparing it to the libraries listed below

• CDCgov / SARS-CoV-2_Sequencing
  A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
  ☆348Updated 2 years ago
• seq-lang / seq
  A high-performance, Pythonic language for bioinformatics
  ☆706Updated 2 years ago
• stjude / learngenomics.dev
  A guided, intuitive introduction to genomics for software engineers. Curated by the community.
  ☆383Updated last year
• ababaian / serratus
  Ultra-deep search for novel viruses
  ☆272Updated 2 years ago
• marbl / CHM13
  The complete sequence of a human genome
  ☆990Updated 2 months ago
• Edinburgh-Genome-Foundry / DnaChisel
  A versatile DNA sequence optimizer
  ☆246Updated 5 months ago
• cov-lineages / pangolin
  Software package for assigning SARS-CoV-2 genome sequences to global lineages.
  ☆442Updated last month
• chanzuckerberg / shasta
  [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
  ☆273Updated 2 years ago
• flag0010 / pop_gen_cnn
  ☆81Updated last year
• bcgsc / NanoSim
  Nanopore sequence read simulator
  ☆284Updated 7 months ago
• sourmash-bio / sourmash
  Quickly search, compare, and analyze genomic and metagenomic data sets.
  ☆522Updated this week
• nextstrain / nextclade
  Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
  ☆243Updated this week
• whatshap / whatshap
  Read-based phasing of genomic variants, also called haplotype assembly
  ☆384Updated 4 months ago
• lbcb-sci / raven
  De novo genome assembler for long uncorrected reads
  ☆226Updated last year
• mentatpsi / OSGenome
  An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
  ☆136Updated last year
• genometools / genometools
  GenomeTools genome analysis system.
  ☆325Updated this week
• jostmey / dkm
  Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features
  ☆94Updated 2 years ago
• nanoporetech / pod5-file-format
  Pod5: a high performance file format for nanopore reads.
  ☆165Updated last week
• bcgsc / abyss
  Assemble large genomes using short reads
  ☆322Updated 6 months ago
• biowasm / biowasm
  WebAssembly modules for genomics
  ☆253Updated last month
• pmelsted / bifrost
  Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
  ☆219Updated 2 weeks ago
• GMOD / jbrowse-components
  Source code for JBrowse 2, a modern React-based genome browser
  ☆257Updated last week
• nanoporetech / bonito
  A PyTorch Basecaller for Oxford Nanopore Reads
  ☆423Updated 3 months ago
• lh3 / bioawk
  BWK awk modified for biological data
  ☆630Updated 3 years ago
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆383Updated 3 months ago
• ekimb / rust-mdbg
  minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
  ☆182Updated last year
• mlin / GenomicSQLite
  Genomics Extension for SQLite
  ☆167Updated last year
• lmdu / pyfastx
  a python package for fast random access to sequences from plain and gzipped FASTA/Q files
  ☆289Updated 9 months ago
• biowasm / aioli
  Framework for building fast genomics web tools with WebAssembly and WebWorkers
  ☆114Updated last month
• marbl / merqury
  k-mer based assembly evaluation
  ☆327Updated last year