skovaka / UNCALLEDView external linksLinks
Raw nanopore signal mapper that enables real-time targeted sequencing
☆533Mar 5, 2024Updated last year
Alternatives and similar repositories for UNCALLED
Users that are interested in UNCALLED are comparing it to the libraries listed below
Sorting:
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆194Apr 28, 2025Updated 9 months ago
- Read Until client library for Nanopore Sequencing☆109Sep 25, 2024Updated last year
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205May 4, 2023Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Oct 13, 2022Updated 3 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated 2 weeks ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆101Jan 28, 2026Updated 2 weeks ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Mar 18, 2024Updated last year
- ☆49Nov 7, 2024Updated last year
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Jul 7, 2020Updated 5 years ago
- adapter trimmer for Oxford Nanopore reads☆380May 8, 2024Updated last year
- Data and analysis for NA12878 genome on nanopore☆402Nov 22, 2022Updated 3 years ago
- Structural variation caller using third generation sequencing☆634Dec 18, 2025Updated last month
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago
- Fast and scalable nanopore adaptive sampling☆35Jun 6, 2023Updated 2 years ago
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- Long read / genome alignment software☆309Dec 16, 2025Updated 2 months ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago
- ☆284Dec 29, 2025Updated last month
- PEPPER-Margin-DeepVariant☆257Jan 12, 2024Updated 2 years ago
- Sequence correction provided by ONT Research☆499Dec 8, 2025Updated 2 months ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 4 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆428Jan 14, 2026Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆296May 9, 2024Updated last year
- ☆35Feb 20, 2020Updated 5 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Jan 13, 2022Updated 4 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆235Dec 29, 2023Updated 2 years ago
- Training models for basecalling Oxford Nanopore reads☆115Jan 13, 2022Updated 4 years ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆331Updated this week
- An accurate and ultra-fast hybrid genome assembler☆87Apr 10, 2024Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆529Sep 27, 2023Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆49Mar 5, 2023Updated 2 years ago
- Sequence-to-graph mapper and graph generator☆470Aug 11, 2025Updated 6 months ago