skovaka / UNCALLEDLinks
Raw nanopore signal mapper that enables real-time targeted sequencing
☆527Updated last year
Alternatives and similar repositories for UNCALLED
Users that are interested in UNCALLED are comparing it to the libraries listed below
Sorting:
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆348Updated 2 years ago
- A high-performance, Pythonic language for bioinformatics☆706Updated 2 years ago
- Ultra-deep search for novel viruses☆273Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Updated 2 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆243Updated 2 weeks ago
- A guided, intuitive introduction to genomics for software engineers. Curated by the community.☆375Updated last year
- A versatile DNA sequence optimizer☆245Updated 3 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆519Updated this week
- Nanopore sequence read simulator☆277Updated 5 months ago
- GenomeTools genome analysis system.☆321Updated last year
- WebAssembly modules for genomics☆253Updated this week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆440Updated 2 months ago
- Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men☆111Updated 2 weeks ago
- Data and analysis for NA12878 genome on nanopore☆397Updated 2 years ago
- The complete sequence of a human genome☆982Updated last month
- De novo genome assembler for long uncorrected reads☆224Updated last year
- ☆81Updated last year
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆182Updated 11 months ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆185Updated 4 months ago
- Source code for JBrowse 2, a modern React-based genome browser☆252Updated this week
- Read-based phasing of genomic variants, also called haplotype assembly☆379Updated 2 months ago
- Assemble large genomes using short reads☆322Updated 5 months ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆424Updated 2 months ago
- k-mer based assembly evaluation☆323Updated last year
- List of software/websites/databases/other stuff for genome engineering☆543Updated last year
- Pod5: a high performance file format for nanopore reads.☆161Updated 3 months ago
- Sequence-to-graph mapper and graph generator☆454Updated 2 weeks ago
- DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …☆243Updated 5 months ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆285Updated 8 months ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆798Updated this week