Alternatives and similar repositories for jbrowse-components

Users that are interested in jbrowse-components are comparing it to the libraries listed below

• Gaius-Augustus / Augustus
  Genome annotation with AUGUSTUS
  ☆323Updated 5 months ago
• daler / gffutils
  GFF and GTF file manipulation and interconversion
  ☆312Updated last year
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆451Updated last year
• ucscGenomeBrowser / kent
  UCSC Genome Browser source. "beta" is released version / "master" is testing.
  ☆250Updated this week
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆523Updated 2 years ago
• lh3 / miniprot
  Align proteins to genomes with splicing and frameshift
  ☆394Updated 2 weeks ago
• pcingola / SnpEff
  ☆299Updated last month
• kcleal / gw
  Genome browser and variant annotation
  ☆387Updated 2 months ago
• igvteam / igv-reports
  Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
  ☆398Updated 2 months ago
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆150Updated 10 years ago
• whatshap / whatshap
  Read-based phasing of genomic variants, also called haplotype assembly
  ☆401Updated 3 weeks ago
• libnano / primer3-py
  Simple oligo analysis and primer design
  ☆187Updated last week
• lmdu / pyfastx
  a python package for fast random access to sequences from plain and gzipped FASTA/Q files
  ☆289Updated this week
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆288Updated last month
• igvteam / igv-webapp
  IGV Web App
  ☆126Updated this week
• The-Sequence-Ontology / Specifications
  GFF and GVF specification documents
  ☆219Updated last year
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆281Updated 3 months ago
• WGLab / doc-ANNOVAR
  Documentation for the ANNOVAR software
  ☆246Updated 5 months ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆276Updated 2 years ago
• bcgsc / NanoSim
  Nanopore sequence read simulator
  ☆289Updated 10 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆229Updated 6 months ago
• MariaNattestad / Ribbon
  A genome browser designed for complex structural variants and long reads.
  ☆295Updated 7 months ago
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆272Updated 8 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆348Updated last month
• vgteam / sequenceTubeMap
  displays multiple genomic sequences in the form of a tube map
  ☆212Updated 2 months ago
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆186Updated this week
• agordon / fastx_toolkit
  FASTA/FASTQ pre-processing programs
  ☆195Updated 3 years ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆285Updated 11 months ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆557Updated last year
• cbg-ethz / V-pipe
  V-pipe is a pipeline designed for analysing NGS data of short viral genomes
  ☆144Updated 2 months ago