seq-lang / seqLinks
A high-performance, Pythonic language for bioinformatics
☆706Updated 3 years ago
Alternatives and similar repositories for seq
Users that are interested in seq are comparing it to the libraries listed below
Sorting:
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆350Updated 2 years ago
- Syntax highlighting for computational biology☆271Updated 2 years ago
- HMMER: biological sequence analysis using profile HMMs☆393Updated 4 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆536Updated last week
- Python library to plot DNA sequence features (e.g. from Genbank files)☆679Updated 6 months ago
- BWK awk modified for biological data☆636Updated 3 years ago
- Raw nanopore signal mapper that enables real-time targeted sequencing☆532Updated last year
- A versatile DNA sequence optimizer☆258Updated 2 months ago
- WebAssembly modules for genomics☆262Updated this week
- Efficient pythonic random access to fasta subsequences☆482Updated 4 months ago
- C library for high-throughput sequencing data formats☆902Updated this week
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆386Updated 7 months ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆289Updated 2 weeks ago
- Ultra-deep search for novel viruses☆275Updated 2 years ago
- A curated list of nextflow based pipelines☆620Updated 7 months ago
- Pairwise Sequence Alignment Library☆275Updated 5 months ago
- genes and genomes at your fingertips☆407Updated 4 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆877Updated 2 weeks ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆856Updated last year
- Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).☆275Updated 8 months ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆221Updated 3 months ago
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆185Updated 4 years ago
- A curated collection of Nextflow implementation patterns☆367Updated 2 years ago
- Performant Pythonic GenomicRanges☆493Updated this week
- DNA plotting library for Python☆301Updated last year
- ATLAS - Three commands to start analyzing your metagenome data☆401Updated 2 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆814Updated 2 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,500Updated last week
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆399Updated 5 months ago
- a python bioinformatics framework☆169Updated 2 weeks ago