Alternatives and similar repositories for seq

Users that are interested in seq are comparing it to the libraries listed below

• bioSyntax / bioSyntax
  Syntax highlighting for computational biology
  ☆265Updated 2 years ago
• EddyRivasLab / hmmer
  HMMER: biological sequence analysis using profile HMMs
  ☆345Updated 3 months ago
• lh3 / bioawk
  BWK awk modified for biological data
  ☆615Updated 2 years ago
• shenwei356 / seqkit
  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
  ☆1,399Updated 2 weeks ago
• sourmash-bio / sourmash
  Quickly search, compare, and analyze genomic and metagenomic data sets.
  ☆504Updated this week
• nanoporetech / dorado
  Oxford Nanopore's Basecaller
  ☆652Updated 3 weeks ago
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆675Updated this week
• lmdu / pyfastx
  a python package for fast random access to sequences from plain and gzipped FASTA/Q files
  ☆280Updated 4 months ago
• samtools / htslib
  C library for high-throughput sequencing data formats
  ☆848Updated last week
• bwa-mem2 / bwa-mem2
  The next version of bwa-mem
  ☆752Updated 9 months ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆388Updated 2 months ago
• Edinburgh-Genome-Foundry / DnaChisel
  A versatile DNA sequence optimizer
  ☆234Updated last month
• DerrickWood / kraken2
  The second version of the Kraken taxonomic sequence classification system
  ☆785Updated 2 weeks ago
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆468Updated last week
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆468Updated last month
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆435Updated 2 weeks ago
• pachterlab / kallisto
  Near-optimal RNA-Seq quantification
  ☆678Updated last month
• lh3 / minimap2
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆1,950Updated 3 weeks ago
• brentp / mosdepth
  fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
  ☆745Updated 3 months ago
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆295Updated last year
• ablab / spades
  SPAdes Genome Assembler
  ☆821Updated this week
• BenLangmead / bowtie
  An ultrafast memory-efficient short read aligner
  ☆261Updated 3 years ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆574Updated 9 months ago
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆574Updated 5 months ago
• cmdcolin / awesome-genome-visualization
  A list of interesting genome browser and genome visualization programs
  ☆956Updated this week
• biowasm / biowasm
  WebAssembly modules for genomics
  ☆243Updated 3 months ago
• hyattpd / Prodigal
  Prodigal Gene Prediction Software
  ☆484Updated last year
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆596Updated 9 months ago
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,004Updated 9 months ago
• jeffdaily / parasail
  Pairwise Sequence Alignment Library
  ☆254Updated last year