seq-lang / seq
A high-performance, Pythonic language for bioinformatics
☆701Updated 2 years ago
Alternatives and similar repositories for seq:
Users that are interested in seq are comparing it to the libraries listed below
- BWK awk modified for biological data☆602Updated 2 years ago
- Efficient pythonic random access to fasta subsequences☆464Updated 4 months ago
- HMMER: biological sequence analysis using profile HMMs☆333Updated 3 weeks ago
- A fast and sensitive gapped read aligner☆693Updated 2 months ago
- The next version of bwa-mem☆738Updated 6 months ago
- genes and genomes at your fingertips☆386Updated 2 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,365Updated this week
- C library for high-throughput sequencing data formats☆830Updated last week
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆723Updated last month
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆375Updated last year
- SPAdes Genome Assembler☆792Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆1,885Updated 3 months ago
- Performant Pythonic GenomicRanges☆453Updated 8 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆467Updated last week
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆274Updated last month
- A curated list of nextflow based pipelines☆579Updated 2 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆604Updated 2 years ago
- bedtools - the swiss army knife for genome arithmetic☆959Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,267Updated last week
- Gene cluster comparison figure generator☆553Updated 2 months ago
- Syntax highlighting for computational biology☆262Updated last year
- Fast genome-wide functional annotation through orthology assignment☆588Updated 9 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,428Updated 6 months ago
- A single molecule sequence assembler for genomes large and small.☆669Updated this week
- A versatile DNA sequence optimizer☆229Updated this week
- Python library to plot DNA sequence features (e.g. from Genbank files)☆613Updated last month
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆486Updated this week
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆230Updated 2 months ago
- Ultra-deep search for novel viruses☆264Updated last year
- WebAssembly modules for genomics☆233Updated last week