Alternatives and similar repositories for SARS-CoV-2_PRJNA612766

Users that are interested in SARS-CoV-2_PRJNA612766 are comparing it to the libraries listed below

• nextstrain / ncov-ingest
  A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…
  ☆37Updated last week
• cov-lineages / lineages
  Resources for calling and describing the circulating lineages of SARS-CoV-2
  ☆37Updated 4 years ago
• BioJulia / BioFmtSpecimens
  A collection of bioinformatics file format specimens to test against
  ☆47Updated 5 years ago
• FRED-2 / Fred2
  Python-based framework for computational immunomics
  ☆40Updated 4 years ago
• ncbi / cwl-ngs-workflows-cbb
  A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
  ☆24Updated 3 weeks ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆72Updated last year
• theosanderson / taxonium
  A tool for exploring large trees in the browser
  ☆114Updated this week
• MonashBioinformaticsPlatform / bio-ansible
  Proof of concept to use ansible + Lmod to deploy a bioinformatics server
  ☆24Updated 2 months ago
• 4ment / seqotron
  Alignment editor for Mac OS X
  ☆29Updated 8 years ago
• bredelings / BAli-Phy
  Bayesian co-estimation of phylogenies and multiple alignments via MCMC
  ☆47Updated this week
• nextstrain / auspice.us
  ☆13Updated last week
• ncbi / magicblast
  ☆37Updated 4 months ago
• Piezoid / pugz
  Truly parallel gzip decompression
  ☆125Updated 6 years ago
• flag0010 / pop_gen_cnn
  ☆81Updated last year
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated last year
• mlin / iitii
  Implicit Interval Tree with Interpolation Index
  ☆41Updated 3 years ago
• ukhsa-collaboration / variant_definitions
  ☆74Updated last year
• Edinburgh-Genome-Foundry / Primavera
  Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
  ☆33Updated 4 months ago
• NCBI-Hackathons / ncbi-cloud-tutorials
  Tutorial content for NCBI cloud data and computing
  ☆17Updated 5 years ago
• nextstrain / fauna
  RethinkDB database to support real-time virus analysis
  ☆34Updated last week
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆86Updated last year
• jbloomlab / alignparse
  Align sequences and then parse features.
  ☆18Updated 4 months ago
• whitehead / plaac
  Prion-Like Amino Acid Composition
  ☆16Updated 2 years ago
• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆20Updated 4 years ago
• birney / wise3
  The 3rd incarnation of the Wise package for sequence analysis
  ☆22Updated 11 years ago
• samuell / gccontent-benchmark
  Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
  ☆58Updated 2 years ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆89Updated this week
• steineggerlab / petasearch
  🧬 Efficient parallelized peta-scale protein database search
  ☆41Updated last year
• revbayes / revbayes.archive
  ☆68Updated last year
• Nazeeefa / awesome-sequencing-tech-papers
  A collection of publications on comparison of high-throughput sequencing technologies.
  ☆28Updated 7 months ago