jbloom / SARS-CoV-2_PRJNA612766
Analysis of early Wuhan SARS-CoV-2 sequences from deleted SRA BioProject PRJNA612766
☆81Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for SARS-CoV-2_PRJNA612766
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆36Updated last week
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆45Updated this week
- serious constellations of reoccurring phylogenetically-independent origin☆38Updated last year
- A tool for exploring large trees in the browser☆100Updated this week
- ☆74Updated 9 months ago
- 🧬 Efficient parallelized peta-scale protein database search☆42Updated 10 months ago
- Phylodynamic estimation of nCoV incidence and prevalence☆19Updated 4 years ago
- Nextstrain build for mpox virus☆45Updated this week
- ☆48Updated 2 years ago
- Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein seq…☆18Updated 2 years ago
- R script to generate high resolution image of ways to balance a centrifuge☆21Updated 5 years ago
- Store of the trained model for pangolin to access.☆55Updated 2 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated 2 years ago
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- Creates Random Coding Sequences with specified GC content and Amino Acid usage☆9Updated 2 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Updated 7 months ago
- A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis☆22Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆61Updated 2 months ago
- Pathogen evolution, selection and immunity☆47Updated 8 months ago
- Rapid analysis and visualization of coronavirus genome variation☆46Updated this week
- Easily download genomes and build BLAST/Bowtie indexes in Python☆21Updated 2 years ago
- Bioinformatics Open Source Sequence machine☆33Updated last year
- A web platform to detect and analyze variants of SARS-CoV-2☆61Updated this week
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated this week
- Cluster Investigation & Virus Epidemiology Tool☆49Updated last year
- Single-Cell RNA-seq pseudo-aligner☆50Updated 6 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- Dugong - Scientific Linux Container☆18Updated 6 years ago
- Epidemiological modeling framework for pathogen population genetics and evolution.☆16Updated last month