jbloom / SARS-CoV-2_PRJNA612766Links
Analysis of early Wuhan SARS-CoV-2 sequences from deleted SRA BioProject PRJNA612766
☆82Updated 7 months ago
Alternatives and similar repositories for SARS-CoV-2_PRJNA612766
Users that are interested in SARS-CoV-2_PRJNA612766 are comparing it to the libraries listed below
Sorting:
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated last week
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆38Updated 4 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Updated last year
- A collection of bioinformatics file format specimens to test against☆47Updated 6 years ago
- ☆13Updated 2 months ago
- ☆74Updated 2 years ago
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆40Updated last year
- Python-based framework for computational immunomics☆40Updated 4 years ago
- Python interface for SIMD Smith-Waterman Library☆38Updated 3 years ago
- GeneNetwork (2nd generation)☆38Updated this week
- Store of the trained model for pangolin to access.☆55Updated 3 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last week
- Phylodynamic estimation of nCoV incidence and prevalence☆19Updated 5 years ago
- Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)☆57Updated 3 years ago
- ☆36Updated 9 months ago
- An R package for the Monte Carlo simulation of sequence evolution☆19Updated 11 years ago
- A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis☆26Updated 5 months ago
- Nextstrain build for mpox virus☆50Updated this week
- The Nextstrain website☆96Updated this week
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated 2 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated last year
- Phylogenetic tree library for JavaScript/Node.js☆37Updated 3 years ago
- A tool for exploring large trees in the browser☆119Updated last week
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆57Updated this week
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- 🧬 Efficient parallelized peta-scale protein database search☆40Updated 2 years ago
- Truly parallel gzip decompression☆124Updated 6 years ago
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago