Alternatives and similar repositories for latch

Users that are interested in latch are comparing it to the libraries listed below

• google / deepsomatic
  DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …
  ☆172Updated 3 weeks ago
• google / deepconsensus
  DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …
  ☆240Updated 2 months ago
• latch-verified / bulk-rnaseq
  Bulk RNA-seq analysis.
  ☆35Updated last year
• pinellolab / CRISPResso2
  Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
  ☆301Updated last week
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆391Updated 3 weeks ago
• laminlabs / lamindb
  A data framework for biology.
  ☆170Updated this week
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆226Updated 3 weeks ago
• jmschrei / tangermeme
  Biological sequence analysis for the modern age.
  ☆223Updated 3 weeks ago
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆274Updated 3 years ago
• sphinxbio / platechain
  LLMs for microplate data
  ☆44Updated 7 months ago
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆263Updated this week
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆152Updated 2 months ago
• GMOD / jbrowse-components
  Source code for JBrowse 2, a modern React-based genome browser
  ☆240Updated this week
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆80Updated this week
• helicalAI / helical
  A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
  ☆120Updated this week
• modernatx / seqlike
  Unified biological sequence manipulation in Python
  ☆207Updated 11 months ago
• ababaian / serratus
  Ultra-deep search for novel viruses
  ☆268Updated 2 years ago
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆103Updated 6 years ago
• JLSteenwyk / latch_library
  A library of code snippets used in Latch SDK development
  ☆11Updated 2 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆92Updated 10 months ago
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆377Updated last year
• jejomath / foam
  Foam low-code for coders app development framework
  ☆19Updated last year
• nf-core / rnafusion
  RNA-seq analysis pipeline for detection of gene-fusions
  ☆159Updated this week
• Edinburgh-Genome-Foundry / DnaChisel
  A versatile DNA sequence optimizer
  ☆237Updated 3 weeks ago
• nf-core / tools
  Python package with helper tools for the nf-core community.
  ☆259Updated this week
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆397Updated this week
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆201Updated last week
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆150Updated 4 months ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆96Updated 8 months ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago