Alternatives and similar repositories for bioinformatics

Users that are interested in bioinformatics are comparing it to the libraries listed below

• mhahsler / rBLAST
  Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
  ☆111Updated last month
• spholmes / F1000_workflow
  ☆43Updated 8 years ago
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆70Updated 2 months ago
• datacarpentry / genomics-workshop
  Genomics Workshop Overview
  ☆47Updated this week
• lvulliard / BioCircos.R
  Htmlwidgets binding R commands to the BioCircos.js library
  ☆39Updated 6 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 months ago
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆94Updated last month
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 4 years ago
• YuLab-SMU / treedata-book
  a complete reference book for treeio, tidytree and ggtree packages
  ☆104Updated 3 years ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• wejlab / animalcules
  R shiny app for interactive microbiome analysis
  ☆55Updated 2 months ago
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 6 years ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆74Updated 2 years ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆38Updated 9 years ago
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆23Updated 2 years ago
• grunwaldlab / metacoder
  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
  ☆143Updated 5 months ago
• Bioconductor / Biostrings
  Efficient manipulation of biological strings
  ☆65Updated last month
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆71Updated last month
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated 4 months ago
• mikeblazanin / gcplyr
  gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data
  ☆35Updated last week
• Swarchal / platetools
  An R package for plotting microtitre plates
  ☆55Updated last year
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• GMOD / JBrowseR
  R interface to the JBrowse 2 Linear Genome View.
  ☆37Updated last year
• adw96 / breakaway
  Species richness with high diversity
  ☆67Updated this week
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated last year
• microbiome / mia
  Microbiome analysis
  ☆53Updated this week
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆20Updated 10 months ago
• mblstamps / stamps2018
  STAMPS 2018 course
  ☆15Updated 7 years ago
• widdowquinn / ten_great_papers
  Ten great papers for wet lab biologists starting out in computational biology
  ☆51Updated 5 years ago
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆56Updated last year