sib-swiss / NGS-introduction-training
SIB course that introduces analysis of NGS data
☆16Updated 3 months ago
Alternatives and similar repositories for NGS-introduction-training:
Users that are interested in NGS-introduction-training are comparing it to the libraries listed below
- Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline☆39Updated last year
- Nextflow training material☆155Updated this week
- Introduction to Bash for bioinformatics☆43Updated 7 months ago
- This repo collects the list of learning online resources related to microbiome computational science and tools.☆82Updated 4 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆106Updated last year
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆74Updated this week
- Download FASTQ files from SRA or ENA repositories.☆309Updated 5 months ago
- ☆49Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆136Updated 3 years ago
- repository of the 2-day course "First steps with R in Life Sciences" from SIB-training☆45Updated last month
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆202Updated this week
- Step-by-step analysis pipeline for RNA-seq data☆105Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆145Updated 6 months ago
- repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training☆58Updated this week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆210Updated last week
- Pipeline to fetch metadata and raw FastQ files from public databases☆171Updated this week
- Uncovering Amiloride's Mechanisms of Action in Multiple Myeloma: A Bioinformatics Approach☆24Updated last month
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆118Updated 2 months ago
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆51Updated 5 months ago
- Python Fundamentals for Biologists☆26Updated 4 months ago
- This repository offers a streamlined RNA-Seq analysis workflow implemented in R, designed to transform raw sequencing data into meaningfu…☆27Updated 3 months ago
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- Bioinformatics tool for Locus Visualisation☆91Updated last week
- ☆88Updated 2 months ago
- Tool for plotting sequencing data along genomic coordinates.☆259Updated last month
- A curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas☆40Updated this week
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- coding exercise using TCGA immune infiltration data☆44Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆144Updated last year
- Match up paired end fastq files quickly and efficiently.☆145Updated 9 months ago