shenlab-sinai / SPEctRA
A Scalable Pipeline for RNA-seq Analysis
☆9Updated 7 years ago
Alternatives and similar repositories for SPEctRA:
Users that are interested in SPEctRA are comparing it to the libraries listed below
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated last month
- ☆67Updated 6 years ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆54Updated this week
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 3 years ago
- ☆22Updated 6 years ago
- Single-CELL rna-seq analysis software☆38Updated 7 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 3 weeks ago
- Finding gene expression states in scRNA-seq data☆50Updated 10 months ago
- Tools for analyzing Slide-seq data☆31Updated last year
- easy access to benchmark datasets☆50Updated 6 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆69Updated last year
- ☆53Updated 3 months ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 8 years ago
- Multi-sample Unified Discriminant ANalysis☆72Updated last year
- ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories☆11Updated 5 years ago
- Doublet detection in single-cell RNA-seq data.☆89Updated 2 weeks ago
- ☆39Updated this week
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- ☆33Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆48Updated 10 months ago
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆20Updated 6 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- ☆33Updated 6 years ago
- ☆35Updated 6 years ago
- a pipeline for single cell RNA-seq data analysis☆68Updated last year
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆37Updated 9 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆37Updated 2 months ago
- Single Cell Analysis of Five'Ends☆47Updated 10 months ago