shao-lab / MotifScan
A motif discovery tool to detect the occurrences of known motifs
β20Updated 4 years ago
Alternatives and similar repositories for MotifScan:
Users that are interested in MotifScan are comparing it to the libraries listed below
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence dataβ43Updated 2 months ago
- Motif Scan and Enrichment Analysis (MoSEA)β16Updated 4 years ago
- 𧬠MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotationsβ31Updated 9 months ago
- β18Updated 2 years ago
- for visual evaluation of read support for structural variationβ51Updated 8 months ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functionsβ20Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.β23Updated 9 years ago
- Gene Fusion Visualiserβ51Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2β29Updated 6 years ago
- Long read to rMATSβ31Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) dataβ27Updated last year
- An R package to process and analyze transcriptomic dataβ16Updated 5 months ago
- Single-cell Hi-C data analysis toolboxβ25Updated 3 years ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.β29Updated last week
- CADD scripts release for offline scoring. For more information about CADD, please visit our websiteβ76Updated 2 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domainsβ40Updated 2 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methodsβ46Updated 2 years ago
- β45Updated 7 years ago
- optimization of ribosome P-site positioning in ribosome profiling dataβ48Updated this week
- chia pet analysis softwareβ25Updated 6 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize protβ¦β23Updated last month
- Python library for processing and visualizing Hi-C dataβ20Updated 4 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniquesβ28Updated 6 years ago
- β33Updated 2 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.β45Updated 2 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq dataβ35Updated 2 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (β¦β33Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs andβ¦β34Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Cluβ¦β31Updated 3 years ago
- ChIP-seq DC and QC Pipelineβ34Updated 3 years ago