shao-lab / MotifScanLinks
A motif discovery tool to detect the occurrences of known motifs
☆20Updated 5 years ago
Alternatives and similar repositories for MotifScan
Users that are interested in MotifScan are comparing it to the libraries listed below
Sorting:
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Updated 2 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Comprehensive and scalable differential splicing analyses☆18Updated last month
- A python package for showing JBrowse views☆26Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆25Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Analyse RNA feature distributions.☆18Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Updated last month
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆49Updated last month
- interactive plots for differential expression analysis☆34Updated 7 months ago
- ☆14Updated 9 years ago
- Version II of Mandalorion☆32Updated 7 years ago
- for visual evaluation of read support for structural variation☆56Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆51Updated 2 months ago
- tspex: tissue-specificity calculator☆36Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆26Updated 5 months ago
- ☆84Updated 5 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆47Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- ☆17Updated 7 months ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 10 months ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- cfDNA analysis workflow☆23Updated 2 years ago