Fill holes in binary 2D & 3D images fast.
☆29Sep 10, 2025Updated 5 months ago
Alternatives and similar repositories for fill_voids
Users that are interested in fill_voids are comparing it to the libraries listed below
Sorting:
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Dec 10, 2025Updated 2 months ago
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆84Nov 5, 2025Updated 4 months ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Oct 22, 2025Updated 4 months ago
- Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-down…☆10Oct 23, 2019Updated 6 years ago
- The Shape of Data: Intrinsic Distance for Comparing Data Distributions☆12Sep 25, 2019Updated 6 years ago
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated last month
- Additional selection tools for Annotorious and the Annotorious OpenSeadragon plugin☆15Jul 21, 2024Updated last year
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Oct 15, 2025Updated 4 months ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆15Nov 5, 2018Updated 7 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Apr 30, 2021Updated 4 years ago
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆448Feb 5, 2026Updated last month
- An open source image processing library☆19Jan 14, 2026Updated last month
- Region-guided CycleGANs for stain transfer☆20Mar 24, 2023Updated 2 years ago
- Code for the SIGGRAPH 2017 paper "Convolutional Neural Networks on Surfaces via Seamless Toric Covers"☆22Feb 7, 2019Updated 7 years ago
- ☆24Aug 27, 2020Updated 5 years ago
- Python extension wrapper for libdeflate.☆30Oct 31, 2025Updated 4 months ago
- A U-Net combined with a variational auto-encoder that is able to learn conditional distributions over semantic segmentations.☆23Dec 17, 2018Updated 7 years ago
- A tool for training machine-learning models with whole-slide imaging datasets☆26Dec 27, 2023Updated 2 years ago
- An OpenSeadragon plugin that adds canvas overlay capability☆24Apr 23, 2019Updated 6 years ago
- WebGL-based viewer for volumetric data☆24Feb 26, 2026Updated last week
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆72Feb 6, 2026Updated last month
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆190Jan 15, 2026Updated last month
- Medical image analysis framework merging ANTsR and deep learning☆68Jul 20, 2025Updated 7 months ago
- nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without ma…☆631Oct 27, 2025Updated 4 months ago
- Image Deconvolution via Noise-Tolerant Self-Supervised Inversion☆30Sep 30, 2024Updated last year
- ☆34Jul 13, 2021Updated 4 years ago
- Interactive Segmentation of Nucleus☆67Nov 22, 2022Updated 3 years ago
- A fast alternative for scipy.interpolate.RegularGridInterpolator in d=3☆30Apr 28, 2019Updated 6 years ago
- A set of codes to classify H&E slides using deep learning☆29Mar 9, 2022Updated 3 years ago
- Bone segmentation in CT scans using Deep Convolutional Neural Networks☆31May 30, 2017Updated 8 years ago
- This page is for A Survey on Deep Learning of Small Sample in Biomedical Image Analysis.☆28Apr 17, 2020Updated 5 years ago
- The official implementation of CortexODE☆36May 26, 2023Updated 2 years ago
- Simple dependency free Python library for the Heat Kernel Signature on triangle meshes☆35Apr 10, 2020Updated 5 years ago
- Integrated Cell project implemented in pytorch☆44Oct 15, 2025Updated 4 months ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Nov 21, 2016Updated 9 years ago
- Automatically exported from code.google.com/p/pyspharm☆35Jul 22, 2025Updated 7 months ago
- Deep Learning application to the partial differential equations☆30May 5, 2018Updated 7 years ago