seung-lab / fill_voids
Fill holes in binary 2D & 3D images fast.
☆20Updated 2 months ago
Alternatives and similar repositories for fill_voids:
Users that are interested in fill_voids are comparing it to the libraries listed below
- Python TEASAR Skeletonization for Sparse Labels☆9Updated last year
- PyTorch implementation of HighRes3DNet☆51Updated last year
- ☆18Updated 2 years ago
- ☆35Updated 2 years ago
- PyTorch-based implementation of Max-flow/Min-cut (graphcut) for 2D/3D data☆14Updated 2 years ago
- Repository for Vesselness algorithms☆47Updated 11 months ago
- ☆15Updated 5 years ago
- 2D image registration in python, using napari.☆16Updated 3 years ago
- Image Registration and Computational Anatomy in PyTorch☆21Updated 3 years ago
- Ranking Operator Response of Path Openings☆28Updated last year
- pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis☆61Updated 5 months ago
- Tutorial about combining PyTorch and NiftyNet for deep learning and medical image computing☆14Updated 5 years ago
- Utilities for reading and writing files created by 3D Slicer☆39Updated 3 months ago
- ☆29Updated 3 years ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆16Updated 3 years ago
- Implementation of quasi-conformal regional flattening of the left atrium☆13Updated last year
- Neuroimaging in PyTorch☆91Updated this week
- Official SuperElastix repository☆87Updated 6 years ago
- ☆34Updated 5 years ago
- NumPy and Tensorflow implementation of the Multidimensional Contrast Limited Adaptive Histogram Equalization (MCLAHE) procedure☆48Updated 2 years ago
- A toolkit for fetal brain localization and segmentation using deep learning☆22Updated 6 years ago
- Fast, Texture Feature Maps from N-Dimensional Images☆23Updated last month
- A U-Net combined with a variational auto-encoder that is able to learn conditional distributions over semantic segmentations.☆23Updated 6 years ago
- Official PyTorch implementation of "Unsupervised Microvascular Image Segmentation Using an Active Contours Mimicking Neural Network"☆73Updated 4 years ago
- MIDL 2018 / MEDIA 2019: one binary extremely large and inflecting sparse kernel (pytorch)☆44Updated 5 years ago
- Official PyTorch implementation of InExtremIS☆22Updated 3 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago
- Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python☆75Updated 2 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆47Updated 11 months ago
- Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-down…☆10Updated 5 years ago