Fill holes in binary 2D & 3D images fast.
☆30Apr 29, 2026Updated 6 months ago
Alternatives and similar repositories for fill_voids
Users that are interested in fill_voids are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆65Oct 18, 2026Updated 2 weeks ago
- Python TEASAR Skeletonization for Sparse Labels☆10Jul 8, 2023Updated 3 years ago
- Official implementation, datasets and trained models of "Masked Image Modeling for Generalizable Organelle Segmentation in Volume EM" (IE…☆11Mar 10, 2026Updated 7 months ago
- Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-down…☆10Oct 23, 2019Updated 7 years ago
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆90Aug 19, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Image pyramid generation for grayscale and segmentation image resize.☆12Jul 30, 2026Updated 3 months ago
- SEAMLeSS (under active development)☆11Aug 23, 2021Updated 5 years ago
- IsUMap is a tool for manifold learning, dimension reduction and data visualization☆24Jan 30, 2026Updated 9 months ago
- Spectrum — Diffusion Sampling Acceleration for ComfyUI Spectrum — 扩散模型采样加速节点☆11Apr 30, 2026Updated 6 months ago
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆465Oct 23, 2026Updated 2 weeks ago
- Interprocess environment manager 🧊☆19Oct 20, 2026Updated 2 weeks ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆29Updated this week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆120Updated this week
- FLIM-focused framework for multimodal single-cell imaging: extract features from FLIM and QPI data, then analyze any tabular dataset inte…☆19Updated this week
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- BiaPy GUI☆10Oct 5, 2026Updated last month
- Asynchronous serverless task queue with timed leasing of tasks. Threaded implementations for SQS and local filesystem.☆41Oct 30, 2026Updated last week
- A 210M text-to-image diffusion transformer trained from scratch on one GPU in 3.5 days: rectified flow on FLUX.2 latents, aspect-ratio bu…☆16Updated this week
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆270Aug 24, 2026Updated 2 months ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆14Oct 15, 2025Updated last year
- nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without ma…☆664Oct 8, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆29Aug 21, 2026Updated 2 months ago
- WebGL-based viewer for volumetric data☆25Updated this week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆98Updated this week
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- Storing and accessing large Julia array locally or in cloud storage without server.☆13Jan 29, 2022Updated 4 years ago
- Fiji plugin to use Cellpose with Appose☆10Updated this week
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- The Shape of Data: Intrinsic Distance for Comparing Data Distributions☆12Sep 25, 2019Updated 7 years ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆14Sep 7, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cython bindings for fpzip, a floating point image compression algorithm.☆36Mar 19, 2025Updated last year
- Convert3D tool☆42Oct 28, 2026Updated last week
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆76Aug 25, 2026Updated 2 months ago
- CopilotJ: A Conversational Multi-agent System for Intelligent and Efficient Bioimage Analysis☆32Updated this week
- Gene- and Pathway-based Framework for Multi-omics Data Intergration☆10Jan 21, 2022Updated 4 years ago
- Comprehensive platform for automated large-scale connectomics. Segmentation and Detection models built upon Funke lab's algorithms.☆14Oct 28, 2026Updated last week
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated 6 months ago