Fill holes in binary 2D & 3D images fast.
☆29Sep 10, 2025Updated 6 months ago
Alternatives and similar repositories for fill_voids
Users that are interested in fill_voids are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆64Mar 17, 2026Updated last week
- Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-down…☆10Oct 23, 2019Updated 6 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Oct 22, 2025Updated 5 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆451Feb 5, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- Python extension wrapper for libdeflate.☆31Oct 31, 2025Updated 4 months ago
- Read, modify and write DICOS files with python code☆13Nov 24, 2025Updated 4 months ago
- VIGRA2 based on xtensor☆10Apr 4, 2018Updated 7 years ago
- The Shape of Data: Intrinsic Distance for Comparing Data Distributions☆12Sep 25, 2019Updated 6 years ago
- PyTorch examples powered by Lightning☆12Dec 28, 2022Updated 3 years ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆72Mar 18, 2026Updated last week
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Oct 15, 2025Updated 5 months ago
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Mar 6, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Sep 7, 2021Updated 4 years ago
- WebGL-based viewer for volumetric data☆24Updated this week
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 4 years ago
- Widgets/utils library to help with Tauri integration in trame.☆14Oct 21, 2025Updated 5 months ago
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 6 years ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Nov 19, 2025Updated 4 months ago
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆262Mar 18, 2026Updated last week
- Different scenarios (one per branch) to test different build configs on production☆19Mar 19, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆13Feb 17, 2022Updated 4 years ago
- SCIFIO ImageIO plugin for ITK☆16Nov 12, 2025Updated 4 months ago
- A Python module for accessing Hamamatsu DCIMG files☆14Jun 28, 2023Updated 2 years ago
- Pytorch implementation of Localised Generative Flows☆11Jul 15, 2020Updated 5 years ago
- Image transformation, compression, and decompression codecs.☆174Mar 7, 2026Updated 3 weeks ago
- Code for Paper Predicting Osteoarthritis Progression via Unsupervised Adversarial Representation Learning☆14Aug 11, 2022Updated 3 years ago
- Additional selection tools for Annotorious and the Annotorious OpenSeadragon plugin☆15Jul 21, 2024Updated last year
- Paint segmentations directly to on-disk/remote zarr arrays☆15Jun 26, 2024Updated last year
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆198Jan 15, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Updated this week
- Tensorflow Implementation for paper "self-supervised generative adversarial networks"☆38Sep 9, 2020Updated 5 years ago
- a autodl environment for native finetune stable diffusion.☆11Dec 7, 2022Updated 3 years ago
- ☆41Sep 1, 2025Updated 6 months ago
- An open source image processing library☆19Jan 14, 2026Updated 2 months ago
- A unified framework for skeletonization, morphological analysis, and connectivity analysis.☆41Aug 23, 2024Updated last year
- The Open Source HCS Platform☆15Dec 16, 2020Updated 5 years ago