seung-lab / connected-components-3d
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
☆412Updated 2 months ago
Alternatives and similar repositories for connected-components-3d:
Users that are interested in connected-components-3d are comparing it to the libraries listed below
- Library to compute surface distance based performance metrics for segmentation tasks.☆562Updated 2 months ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆148Updated this week
- Library for 3D augmentations☆248Updated 6 months ago
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆248Updated 2 months ago
- ☆231Updated last year
- How Distance Transform Maps Boost Segmentation CNNs: An Empirical Study☆391Updated 4 years ago
- Code for the NeurIPS 2019 paper: Topology-Preserving Deep Image Segmentation☆169Updated last year
- Multi-Planar UNet for autonomous segmentation of 3D medical images☆191Updated last year
- Differentiable elastic deformations for N-dimensional images (Python, SciPy, NumPy, TensorFlow, PyTorch).☆189Updated 2 months ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆235Updated 3 weeks ago
- Code for "DeepDRR: A Catalyst for Machine Learning in Fluoroscopy-guided Procedures". https://arxiv.org/abs/1803.08606☆231Updated this week
- matlab and python wrap of crf and dense crf, both 2d and 3d are supported☆169Updated 2 years ago
- ☆231Updated last year
- Medical image registration using deep learning☆584Updated 2 years ago
- Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data☆167Updated 2 years ago
- nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without ma…☆583Updated 10 months ago
- ☆181Updated 4 years ago
- Image registration using pytorch☆180Updated 9 months ago
- the Vascular Modeling Toolkit☆373Updated 9 months ago
- ☆360Updated last week
- Official code for "Boundary loss for highly unbalanced segmentation", runner-up for best paper award at MIDL 2019. Extended version in Me…☆685Updated last year
- Python module to analyse skeleton (thin object) images☆123Updated 3 weeks ago
- The implementation of 3D-UNet using PyTorch☆101Updated 2 months ago
- Simple pure-python module for reading and writing nrrd files.☆122Updated 3 months ago
- an image registration/augmentation/segmentation package☆170Updated 2 years ago
- Multi-lingual medical image registration library☆522Updated last year
- Set of models for segmentation of 3D volumes☆130Updated 10 months ago
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆710Updated this week
- Fully automatic total body segmentation in 3D Slicer using "TotalSegmentator" AI model☆216Updated last month
- Implementation of the DeepVesselNet deep learning network☆147Updated last year