seung-lab / connected-components-3dLinks
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
☆425Updated last week
Alternatives and similar repositories for connected-components-3d
Users that are interested in connected-components-3d are comparing it to the libraries listed below
Sorting:
- Library to compute surface distance based performance metrics for segmentation tasks.☆578Updated 7 months ago
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆256Updated 7 months ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆170Updated last week
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆255Updated 3 weeks ago
- Differentiable elastic deformations for N-dimensional images (Python, SciPy, NumPy, TensorFlow, PyTorch).☆192Updated 7 months ago
- Image registration using pytorch☆183Updated last year
- Multi-lingual medical image registration library☆528Updated 2 years ago
- Simple pure-python module for reading and writing nrrd files.☆122Updated 8 months ago
- Image registration laboratory for 2D and 3D image data☆430Updated 5 years ago
- Code for "DeepDRR: A Catalyst for Machine Learning in Fluoroscopy-guided Procedures". https://arxiv.org/abs/1803.08606☆246Updated 3 weeks ago
- SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, educati…☆996Updated this week
- Library for 3D augmentations☆256Updated 11 months ago
- build net work from skeleton image (2D-3D)☆246Updated 3 years ago
- Python module to analyse skeleton (thin object) images☆135Updated last week
- ☆247Updated last year
- the Vascular Modeling Toolkit☆388Updated last month
- "pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.☆175Updated 9 months ago
- an image registration/augmentation/segmentation package☆173Updated 2 years ago
- Fast Implementation of Generalised Geodesic Distance Transform for CPU (OpenMP) and GPU (CUDA)☆104Updated last year
- ☆178Updated 4 years ago
- Fully automatic total body segmentation in 3D Slicer using "TotalSegmentator" AI model☆227Updated last week
- Medical image registration using deep learning☆600Updated 2 years ago
- Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images☆109Updated 5 years ago
- An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point …☆613Updated 6 months ago
- ☆240Updated last year
- How Distance Transform Maps Boost Segmentation CNNs: An Empirical Study☆395Updated 4 years ago
- Official elastix repository☆538Updated last week
- Set of models for segmentation of 3D volumes☆135Updated last year
- Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data☆178Updated 2 years ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆169Updated 4 months ago