seung-lab / connected-components-3dLinks
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
☆422Updated 2 weeks ago
Alternatives and similar repositories for connected-components-3d
Users that are interested in connected-components-3d are comparing it to the libraries listed below
Sorting:
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆254Updated 5 months ago
- Library to compute surface distance based performance metrics for segmentation tasks.☆575Updated 5 months ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆161Updated 2 weeks ago
- Multi-lingual medical image registration library☆524Updated 2 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆245Updated 2 weeks ago
- An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point …☆611Updated 4 months ago
- Library for 3D augmentations☆252Updated 9 months ago
- SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, educati…☆984Updated last week
- Differentiable elastic deformations for N-dimensional images (Python, SciPy, NumPy, TensorFlow, PyTorch).☆190Updated 5 months ago
- Simple pure-python module for reading and writing nrrd files.☆122Updated 6 months ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆160Updated 2 months ago
- build net work from skeleton image (2D-3D)☆242Updated 3 years ago
- Medical image registration using deep learning☆593Updated 2 years ago
- Code for "DeepDRR: A Catalyst for Machine Learning in Fluoroscopy-guided Procedures". https://arxiv.org/abs/1803.08606☆239Updated last month
- Image registration laboratory for 2D and 3D image data☆429Updated 4 years ago
- Image registration using pytorch☆183Updated last year
- Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data☆177Updated 2 years ago
- "pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.☆172Updated 7 months ago
- Extension for 3D Slicer that allows the application to be used from Jupyter notebook☆252Updated last year
- Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images☆108Updated 5 years ago
- Fully automatic total body segmentation in 3D Slicer using "TotalSegmentator" AI model☆223Updated last month
- an image registration/augmentation/segmentation package☆172Updated 2 years ago
- ☆88Updated last year
- nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without ma…☆597Updated this week
- Python module to analyse skeleton (thin object) images☆128Updated 3 weeks ago
- ☆369Updated last month
- ☆239Updated last year
- Official elastix repository☆531Updated 3 weeks ago
- Medical image processing in Python☆604Updated 11 months ago
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆751Updated 3 weeks ago