Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
☆452May 5, 2026Updated 3 weeks ago
Alternatives and similar repositories for connected-components-3d
Users that are interested in connected-components-3d are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆202May 18, 2026Updated last week
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆265Mar 18, 2026Updated 2 months ago
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆86Nov 5, 2025Updated 6 months ago
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆65Apr 28, 2026Updated 3 weeks ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fill holes in binary 2D & 3D images fast.☆29Apr 29, 2026Updated 3 weeks ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Apr 18, 2026Updated last month
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆57Apr 23, 2026Updated last month
- ☆12Updated this week
- Official code for "Boundary loss for highly unbalanced segmentation", runner-up for best paper award at MIDL 2019. Extended version in Me…☆729Mar 19, 2024Updated 2 years ago
- Tool for robust segmentation of >100 important anatomical structures in CT and MR images☆2,708Updated this week
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated 3 months ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆72May 18, 2026Updated last week
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Jun 20, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Mar 6, 2026Updated 2 months ago
- Digitally recconstructed radiograph☆26Jul 6, 2020Updated 5 years ago
- ☆8,448May 18, 2026Updated last week
- An ITK module to compute 3D thickness☆43Apr 23, 2026Updated last month
- Medical imaging processing for AI applications.☆2,394May 6, 2026Updated 2 weeks ago
- Library to compute surface distance based performance metrics for segmentation tasks.☆597Feb 19, 2025Updated last year
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- Read and write Neuroglancer datasets programmatically.☆173Apr 24, 2026Updated last month
- How Distance Transform Maps Boost Segmentation CNNs: An Empirical Study☆402Apr 30, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without ma…☆642Oct 27, 2025Updated 6 months ago
- This is my 3D parallel algorithm, but it is not perfect. It provides a way for you to optimize it. I hope someone can give a good opinion☆15Dec 27, 2019Updated 6 years ago
- AI Toolkit for Healthcare Imaging☆8,186Updated this week
- The official repository of "AbdomenCT-1K: Is Abdominal Organ Segmentation A Solved Problem?"☆266Nov 26, 2023Updated 2 years ago
- A collection of loss functions for medical image segmentation☆4,005Nov 1, 2023Updated 2 years ago
- Medical image processing in Python☆618Sep 3, 2024Updated last year
- Unsupervised Learning for Image Registration☆2,721May 18, 2026Updated last week
- SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, educati…☆1,060Updated this week
- Official PyTorch implementation of "Unsupervised Microvascular Image Segmentation Using an Active Contours Mimicking Neural Network"☆73Apr 1, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A PyTorch add-on for working with image mappings and displacement fields, including Spatial Transformers☆51Feb 15, 2022Updated 4 years ago
- [ICLR 2024 oral; top 1.2%] Supervised Pre-Trained 3D Models for Medical Image Analysis (9,262 CT volumes + 25 annotated classes)☆417Jan 13, 2026Updated 4 months ago
- GPU accelerated python library for generation of Digitally Reconstructed Radiographs (March 2018)☆63May 1, 2019Updated 7 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆67May 16, 2026Updated last week
- A framework for data augmentation for 2D and 3D image classification and segmentation☆1,174May 12, 2026Updated 2 weeks ago
- A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biome…☆171Dec 6, 2023Updated 2 years ago
- ☆35May 10, 2022Updated 4 years ago