seung-lab / skeletonizationLinks
Python TEASAR Skeletonization for Sparse Labels
☆9Updated 2 years ago
Alternatives and similar repositories for skeletonization
Users that are interested in skeletonization are comparing it to the libraries listed below
Sorting:
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆160Updated last week
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆18Updated last month
- Fill holes in binary 2D & 3D images fast.☆25Updated last month
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆82Updated 6 months ago
- Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them complet…☆6Updated 6 months ago
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructions…☆12Updated 7 years ago
- Ranking Operator Response of Path Openings☆29Updated last year
- ☆36Updated 3 years ago
- Automated quantification of fibrous networks☆12Updated 5 months ago
- 3D Image Skeletonization Tools☆37Updated last year
- ☆18Updated 2 years ago
- Utilities for reading and writing files created by 3D Slicer☆40Updated 6 months ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆54Updated 4 months ago
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.☆29Updated 4 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆118Updated last year
- Repository for Vesselness algorithms☆47Updated last year
- 2d and 3d distance transform based skeletonization☆22Updated last year
- Vessel and tube centerline extraction☆34Updated 4 months ago
- Perform image registration of 2D and 3D volumes using state-of-the-art deformable registration.☆23Updated 6 years ago
- Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python☆77Updated 2 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆51Updated last year
- An ITK module to compute 3D thickness☆42Updated 3 months ago
- An implementation of morphological contour interpolation☆33Updated last month
- PyTorch-based implementation of Max-flow/Min-cut (graphcut) for 2D/3D data☆15Updated 2 years ago
- A curve skeletonization method for elongated objects that may be noisy, IEEE WACV paper, Aug. 2018 update.☆11Updated last year
- 2D image registration in python, using napari.☆16Updated 3 years ago
- Official SuperElastix repository☆87Updated 6 years ago
- Simple scripts to reconstruct 3D objects from images based on Chan-Vese Segmentation and Marching Cube algorithm.☆11Updated last year
- A pipeline to extract vessels from MR images and perform analysis. Code to my TPAMI paper "Tracking the adaptation and compensation proce…☆29Updated 3 years ago
- ☆28Updated last year