seung-lab / euclidean-distance-transform-3dLinks
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
☆260Updated 3 weeks ago
Alternatives and similar repositories for euclidean-distance-transform-3d
Users that are interested in euclidean-distance-transform-3d are comparing it to the libraries listed below
Sorting:
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆180Updated this week
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆83Updated 2 weeks ago
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆430Updated 2 weeks ago
- An implementation of morphological contour interpolation☆34Updated this week
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated 3 weeks ago
- Fast Implementation of Generalised Geodesic Distance Transform for CPU (OpenMP) and GPU (CUDA)☆106Updated last year
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆68Updated last month
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆257Updated 2 months ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆172Updated 5 months ago
- 2d and 3d distance transform based skeletonization☆23Updated last year
- Python Implementation of the LDDMM algorithm☆54Updated 5 years ago
- Image registration using pytorch☆184Updated last year
- the Vascular Modeling Toolkit☆390Updated 2 months ago
- Python module to analyse skeleton (thin object) images☆138Updated last month
- Utilities for reading and writing files created by 3D Slicer☆41Updated 9 months ago
- Volumetric parameterization of the placenta to a flattened template☆18Updated last year
- Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data☆180Updated 2 years ago
- The Biomedical Image Segmentation App is a free and open-source application for segmenting 3D images such as CT and MRI scans, developed …☆56Updated this week
- Simple pure-python module for reading and writing nrrd files.☆123Updated 9 months ago
- ☆32Updated 5 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- ShapeWorks☆122Updated last week
- The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core librarie…☆198Updated 8 months ago
- MATLAB code to calculate the 3D skeleton of a binary volume using parallel medial axis thinning☆47Updated 6 years ago
- an image registration/augmentation/segmentation package☆174Updated 2 years ago
- 3D Image Skeletonization Tools☆37Updated 2 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆123Updated last year
- Constrained Large Deformation Diffeomorphic Image Registration (CLAIRE)☆50Updated 8 months ago
- Official SuperElastix repository☆88Updated 6 years ago
- A setup script to generate ITK Python Wheels☆63Updated this week