seung-lab / euclidean-distance-transform-3dLinks
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
☆260Updated last month
Alternatives and similar repositories for euclidean-distance-transform-3d
Users that are interested in euclidean-distance-transform-3d are comparing it to the libraries listed below
Sorting:
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆182Updated last month
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆439Updated 2 months ago
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆83Updated 2 months ago
- An implementation of morphological contour interpolation☆34Updated last month
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated 2 months ago
- 2d and 3d distance transform based skeletonization☆24Updated 2 years ago
- ☆32Updated 5 years ago
- Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data☆181Updated 2 years ago
- Fast Implementation of Generalised Geodesic Distance Transform for CPU (OpenMP) and GPU (CUDA)☆106Updated last year
- ShapeWorks☆126Updated 3 weeks ago
- MATLAB code to calculate the 3D skeleton of a binary volume using parallel medial axis thinning☆47Updated 6 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆260Updated 3 weeks ago
- Automated quantification of fibrous networks☆12Updated 10 months ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆173Updated last month
- the Vascular Modeling Toolkit☆400Updated 4 months ago
- Python module to analyse skeleton (thin object) images☆138Updated 3 months ago
- 2D/3D biopolymer network extraction and quantification.☆16Updated 4 months ago
- Volume Renderer with VTK☆86Updated 3 months ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- Biomedisa is a free and open-source application for segmenting 3D images such as CT and MRI scans, developed at The Australian National U…☆56Updated last week
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆70Updated last month
- Simple pure-python module for reading and writing nrrd files.☆124Updated 11 months ago
- Volumetric parameterization of the placenta to a flattened template☆18Updated last year
- Utilities for reading and writing files created by 3D Slicer☆41Updated 11 months ago
- 3D Image Skeletonization Tools☆37Updated 2 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆127Updated last year
- an image registration/augmentation/segmentation package☆174Updated 2 years ago
- A curated list of resources for 3D segmentation of neurites in EM images☆54Updated last year
- 3D graph cut segmentation☆89Updated 4 years ago
- Python implementation of 2d and 3d image registration☆33Updated 4 years ago