C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
☆59Jun 25, 2025Updated last year
Alternatives and similar repositories for pi2
Users that are interested in pi2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Mar 26, 2021Updated 5 years ago
- ☆14Jul 8, 2023Updated 3 years ago
- Biomedisa is a free and open-source application for segmenting 3D images such as CT and MRI scans, developed at The Australian National U…☆69Jul 21, 2026Updated last week
- Numerical techniques for ring artifact removal in tomography https://sarepy.readthedocs.io/☆63Feb 12, 2025Updated last year
- segmentation of spherical vesicles in cryo-electron tomography☆12Oct 25, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Montaging for microscopy imaging files☆32Apr 25, 2026Updated 3 months ago
- Reconstruction and image processing of micro-CT/nano-CT data taken at SPring-8 and APS Argonne.☆15Jul 7, 2026Updated 3 weeks ago
- ☆12Apr 22, 2022Updated 4 years ago
- Block-wise task scheduling for large nD volumes.☆32Updated this week
- ☆116Updated this week
- ImgLib2/BDV implementation of Stitching for large datasets☆83Jul 3, 2026Updated 3 weeks ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆13Sep 7, 2021Updated 4 years ago
- Python implementation of ImageJ Cell Magic Wand tool☆11Oct 28, 2016Updated 9 years ago
- Running compute-intense parts of BigStitcher distributed☆31Jul 15, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Matlab application for electrophysiology data analysis☆22Apr 4, 2025Updated last year
- Next generation of SuRVoS☆10Oct 11, 2023Updated 2 years ago
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆20Apr 19, 2016Updated 10 years ago
- Real-time visualization tool for tomographic data.☆28May 29, 2020Updated 6 years ago
- Material to showcase and test several tools and packages releated to ZEN, CZI image files and python packages related to those topics☆20Feb 25, 2026Updated 5 months ago
- Data processing algorithms for tomography: https://algotom.readthedocs.io☆68Oct 31, 2025Updated 8 months ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- ☆15Feb 5, 2025Updated last year
- A set of MATLAB wrapper scripts to help with pre-processing of tomography data.☆21Jun 2, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GPUCorrel : A GPU accelerated Digital Image Correlation Software written in Python. To cite this Original Software Publication: https://w…☆11Sep 9, 2021Updated 4 years ago
- A collection of tools for the analysis of biological data☆12Mar 22, 2016Updated 10 years ago
- Repository for my research on generative modelling of cell images☆14Dec 8, 2022Updated 3 years ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- Meta-learning local synaptic plasticity for continual familiarity detection☆16Oct 25, 2022Updated 3 years ago
- Parameter-free statistical testing package☆12Jul 7, 2026Updated 3 weeks ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆26Jun 24, 2026Updated last month
- Simple watershed and agglomeration library for affinity graphs.☆30Sep 18, 2025Updated 10 months ago
- ☆12May 30, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Jun 20, 2025Updated last year
- Matlab function to import ROIs from ImageJ☆27Dec 13, 2019Updated 6 years ago
- Python module to handle Bruker Paravision MRI files (parameter files, raw data, processed data).☆20Feb 3, 2026Updated 5 months ago
- Vasculature blood flow computation and impact of astrocytic endfeet on vessels☆11Feb 26, 2025Updated last year
- Software to generate 2D/3D/4D analytical phantoms and their Radon transforms (parallel beam) for image processing☆134May 14, 2026Updated 2 months ago
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18May 18, 2020Updated 6 years ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 7 years ago