arttumiettinen / pi2
C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
☆54Updated 3 weeks ago
Alternatives and similar repositories for pi2:
Users that are interested in pi2 are comparing it to the libraries listed below
- A napari plugin for itk-elastix☆38Updated 10 months ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆47Updated 10 months ago
- Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…☆29Updated 3 weeks ago
- Create movies from series of key-frames in napari.☆37Updated 3 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated last week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 4 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆70Updated 3 years ago
- Process images using SimpleITK in napari☆20Updated 6 months ago
- Script that registers Histology slices to volumetric image data☆11Updated last year
- 2D image registration in python, using napari.☆16Updated 3 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 7 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated last month
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆31Updated 2 weeks ago
- Three-dimensional residual channel attention networks☆51Updated 2 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 4 months ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆39Updated 5 months ago
- Create 3D/4D animations using a natural language-based syntax☆59Updated 2 years ago
- INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration☆12Updated 3 years ago
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆78Updated this week
- Tools for distributed alignment of massive images☆81Updated this week
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated 2 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last month
- ImgLib2/BDV implementation of Stitching for large datasets☆73Updated last week
- Binary releases of Vaa3D and related software components☆44Updated last year
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆42Updated 7 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 5 months ago
- Matlab function to import ROIs from ImageJ☆27Updated 5 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆109Updated 10 months ago