theia-dev / Qiber3DLinks
Automated quantification of fibrous networks
β12Updated 6 months ago
Alternatives and similar repositories for Qiber3D
Users that are interested in Qiber3D are comparing it to the libraries listed below
Sorting:
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)β164Updated this week
- π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumesβ51Updated last year
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.β18Updated last week
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ74Updated 4 years ago
- Command line tool for registration of very large 3D volumes.β14Updated last year
- 2D/3D biopolymer network extraction and quantification.β16Updated 2 years ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vesselsβ¦β48Updated last year
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.β55Updated 2 months ago
- 3D Image Skeletonization Toolsβ37Updated last year
- An open-source application for the analysis and visualization of segmented vasculature datasetsβ119Updated last year
- β29Updated last year
- β93Updated last month
- Utilities for reading and writing files created by 3D Slicerβ40Updated 7 months ago
- Simple watershed and agglomeration library for affinity graphs.β25Updated 9 months ago
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructionsβ¦β12Updated 7 years ago
- An implementation of morphological contour interpolationβ33Updated 2 months ago
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.β256Updated 5 months ago
- Ranking Operator Response of Path Openingsβ29Updated last year
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Instβ¦β70Updated 2 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of imagesβ249Updated last month
- Very fast greedy diffeomorphic registration codeβ81Updated 3 months ago
- Image analysis approaches to analyze the OAI magnetic resonance imagesβ26Updated 8 months ago
- Python scripts to read and write the CREMI hdf5 file format.β38Updated 2 years ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, β¦β54Updated 5 months ago
- The Biomedical Image Segmentation App is a free and open-source application for segmenting 3D images such as CT and MRI scans, developed β¦β53Updated this week
- β32Updated 5 years ago
- A software to edit, model and mesh vascular networks from centerlines.β22Updated last year
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolutionβ15Updated last year
- Fill holes in binary 2D & 3D images fast.β26Updated this week
- Open library for LDDMM and Metamorphosis in PyTorchβ23Updated last month