Material to showcase and test several tools and packages releated to ZEN, CZI image files and python packages related to those topics
☆20Feb 25, 2026Updated 6 months ago
Alternatives and similar repositories for ZEN_API_Python_CZI_workshop
Users that are interested in ZEN_API_Python_CZI_workshop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents☆24Dec 17, 2025Updated 8 months ago
- ☆22May 12, 2021Updated 5 years ago
- Read Olympus image files (OIF and OIB).☆13Feb 9, 2026Updated 6 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆171Jul 10, 2026Updated last month
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆28Updated this week
- Full Docs @ https://skalalab.github.io/flim_playground_doc/☆16Updated this week
- Course on Deep Learning for imaging using PyTorch☆16Feb 2, 2022Updated 4 years ago
- General-purpouse camera capture plugin for data streaming to napari☆26Mar 18, 2024Updated 2 years ago
- libCZI is an Open Source Cross-Platform C++ library to read and write CZI.☆73Jul 13, 2026Updated last month
- N-dimensional, multiresolution file format for Micro-Manager☆16Jun 17, 2026Updated 2 months ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆37Aug 6, 2026Updated 3 weeks ago
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆29Nov 17, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bio-Formats image file format to raw format converter☆111Aug 4, 2026Updated 3 weeks ago
- Jupyter notebook based multiplex image processing pipeline.☆10Jun 23, 2026Updated 2 months ago
- ☆11May 6, 2024Updated 2 years ago
- Demo Code for PicoQuants Time Tagged File Formats☆33Oct 15, 2025Updated 10 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- https://grasp.ufv.br/☆17Jul 6, 2023Updated 3 years ago
- BMC (BiblioManagementClient) is a simple script to download and store your articles.☆16Mar 30, 2016Updated 10 years ago
- ImageJ / Fiji macro to automatically correct white balance in RGB images☆16Nov 13, 2017Updated 8 years ago
- Natural Ergonomic Keyboard Type A☆14Mar 25, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆184Jul 30, 2026Updated last month
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 10 years ago
- RawQuant is a Python package for extracting scan meta data and quantification values from Thermo .raw files.☆11Jan 4, 2019Updated 7 years ago
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 4 years ago
- marimo + pixi starter template☆21Updated this week