compgenomics / MeTPeakLinks
☆12Updated 6 years ago
Alternatives and similar repositories for MeTPeak
Users that are interested in MeTPeak are comparing it to the libraries listed below
Sorting:
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆111Updated 2 years ago
- A factor analysis package☆101Updated 13 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆106Updated 4 years ago
- Generate IGV style locus tracks from bigWig files in R☆167Updated 10 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 7 months ago
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- AQUAS TF and histone ChIP-seq pipeline☆110Updated 3 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year
- ☆88Updated last month
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 7 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆51Updated 2 years ago
- Analysis pipeline for ATAC-seq Data☆61Updated 4 years ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- Links to ATAC-seq analysis tools☆69Updated 4 years ago
- deconstructSigs☆143Updated 2 years ago
- ☆63Updated last year
- Estimate locus specific human LINE-1 expression.☆37Updated 2 years ago