scottzijiezhang / MeRIPtools

Related projects ⓘ

Alternatives and complementary repositories for MeRIPtools

• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆12Updated 2 years ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 2 years ago
• wenweixiong / MARVEL
  ☆40Updated 3 months ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆15Updated 2 years ago
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆10Updated 5 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆15Updated 9 months ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆26Updated 2 years ago
• dbrg77 / ISSAAC-seq
  ☆16Updated last year
• hancockinformatics / pathlinkR
  Analysis and visualization of RNA-Seq results
  ☆20Updated 2 weeks ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆15Updated 4 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆29Updated 2 years ago
• Acribbs / TallyNN
  single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)
  ☆13Updated last year
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆14Updated 2 years ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 4 years ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆14Updated 4 years ago
• flemingtonlab / SpliceTools
  ☆18Updated 4 months ago
• Castelo-Branco-lab / scCut-Tag_2020
  Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
  ☆10Updated 3 years ago
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆15Updated 6 months ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆19Updated 11 months ago
• salzman-lab / SICILIAN
  ☆19Updated 5 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆20Updated 7 months ago
• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 3 years ago
• cyang235 / smooth-seq
  A pipeline for Smooth-seq data analysis.
  ☆10Updated 3 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆22Updated 2 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 3 years ago
• epigen / scifiRNA-seq
  ☆11Updated 3 years ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆30Updated 3 years ago
• RitataLU / ATACgraph
  ☆16Updated last year
• veltenlab / mitoClone
  ☆12Updated 3 years ago