scottzijiezhang / MeRIPtools
☆8Updated 3 years ago
Alternatives and similar repositories for MeRIPtools:
Users that are interested in MeRIPtools are comparing it to the libraries listed below
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- ☆46Updated 7 months ago
- ☆20Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- ☆10Updated 4 months ago
- ☆18Updated 8 months ago
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆20Updated last year
- iread☆24Updated 3 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆12Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆15Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆20Updated 3 weeks ago
- dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline☆9Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆14Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆18Updated 4 years ago
- ☆15Updated last year