ml-jku / DNA-xLSTMLinks
☆14Updated 8 months ago
Alternatives and similar repositories for DNA-xLSTM
Users that are interested in DNA-xLSTM are comparing it to the libraries listed below
Sorting:
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆66Updated 5 months ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆40Updated 4 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆85Updated last month
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 2 years ago
- Repository for mRNA Paper and CodonBERT publication.☆130Updated last year
- Jax code for functional genomics ML☆14Updated 4 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Arnie-based DegScore tool.☆26Updated 2 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Updated 3 years ago
- Insights into the inner workings of transformer models for protein function prediction☆15Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 11 months ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆51Updated last year
- Benchmarking Pipeline for Prediction of Protein-Protein Interactions☆13Updated 3 years ago
- A pretrained single cell gene expression language model☆12Updated 2 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated 11 months ago
- Inference and numerics for multi-hybrid AI model architectures☆68Updated last month
- Primary RNA sequence model☆38Updated last year
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆28Updated 2 months ago
- ☆31Updated 4 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆72Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ProCyon: A multimodal foundation model for protein phenotypes☆35Updated 4 months ago
- Diverse Genomic Embedding Benchmark☆46Updated 3 months ago
- Biological Network Integration using Convolutions☆62Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆33Updated 3 months ago
- a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures☆29Updated 2 years ago
- A standard library for biological research.☆26Updated 3 weeks ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆37Updated last week
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆76Updated last month