ChengF-Lab / GPSnet
☆34Updated 6 years ago
Alternatives and similar repositories for GPSnet:
Users that are interested in GPSnet are comparing it to the libraries listed below
- Network-based Drug Repurposing for Human Coronavirus☆40Updated 5 years ago
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 6 months ago
- ☆27Updated 2 weeks ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆53Updated last year
- Knowledge-primed neural networks☆36Updated 2 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆29Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆50Updated 11 months ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆23Updated 2 months ago
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆31Updated 4 years ago
- Python package to load and query ARCHS4 data☆20Updated last month
- Load bioinformatics datasets into a local database☆11Updated last week
- A deep generative neural network based approach to impute drug response☆20Updated 3 years ago
- Connectivity Map analysis in MATLAB☆44Updated 3 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆62Updated last month
- A Deep Learning based Efficacy Prediction System for drug discovery☆66Updated 2 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Functional Embedding of Gene Signatures☆43Updated last year
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆16Updated last year
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆54Updated 4 years ago
- Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"☆40Updated 2 years ago
- Library of Integrated Cellular Signatures L1000☆31Updated 3 years ago
- ☆33Updated 2 years ago
- ☆20Updated 3 years ago