Alternatives and similar repositories for GPSnet

Users that are interested in GPSnet are comparing it to the libraries listed below

• ChengF-Lab / 2019-nCoV
  Network-based Drug Repurposing for Human Coronavirus
  ☆41Updated 6 years ago
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆28Updated 3 years ago
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆49Updated 4 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆29Updated 8 years ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆56Updated 2 years ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆63Updated 2 years ago
• AstraZeneca / skywalkR
  code for Gogleva et al manuscript
  ☆46Updated 3 years ago
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆54Updated 6 months ago
• fraenkel-lab / OmicsIntegrator2
  Prize-Collecting Steiner Forests for Interactomes
  ☆63Updated last year
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆29Updated 11 months ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 4 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆48Updated last year
• cmap / cmapM
  Connectivity Map analysis in MATLAB
  ☆48Updated 4 years ago
• hosseinshn / MOLI
  MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction
  ☆55Updated 5 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆28Updated 2 years ago
• sysbio-curie / Neko
  This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.
  ☆17Updated 4 months ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated 8 months ago
• zj-zhang / AMBER
  Automated Modelling for Biological Evidence-based Research
  ☆47Updated 2 years ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• Pharmaco-OmicsLab / EasyPubPlot
  Shiny app to easily create publishable plots for scientific papers
  ☆39Updated 5 months ago
• saramasarone / enrich_omics
  A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
  ☆20Updated last year
• TeoSakel / deep-drug-response
  ☆20Updated 5 years ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆32Updated 6 months ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 6 years ago
• cancerdatasci / demeter2
  Inference of gene dependency from RNAi screening datasets.
  ☆19Updated 5 years ago
• IOR-Bioinformatics / PCSF
  ☆14Updated 6 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 4 years ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆16Updated 4 years ago
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated last year