Alternatives and similar repositories for scikit-bio-cookbook

Users that are interested in scikit-bio-cookbook are comparing it to the libraries listed below

• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last week
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 8 months ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 4 months ago
• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆74Updated 4 years ago
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆67Updated 3 weeks ago
• IQTLabs / squiggle
  📈 DNA Sequence Visualization for Humans
  ☆42Updated 4 years ago
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆27Updated 6 years ago
• sbg / sevenbridges-python
  SevenBridges Python Api bindings
  ☆46Updated 9 months ago
• tiagoantao / pygenomics
  A library for next generation genomics in Python 3
  ☆18Updated 7 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• tiagoantao / genomics-notebooks
  IPython notebooks to teach Genomics and Population Genetics
  ☆21Updated 8 years ago
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆75Updated 2 months ago
• aldro61 / kover
  Learn interpretable computational phenotyping models from k-merized genomic data
  ☆52Updated 3 years ago
• lucapinello / Haystack
  Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆31Updated 8 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• hbc / NGS-Data-Analysis-long-course
  ☆11Updated 8 years ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 9 months ago
• audy / bioinformatics-hacks
  Scripts for miscelleneous bioinformatics tasks
  ☆49Updated 5 years ago
• mtarbit / Rosalind-Problems
  Solutions to problems from http://rosalind.info/
  ☆37Updated 13 years ago
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆88Updated 5 years ago
• phenopolis / phenopolis
  An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
  ☆33Updated 3 years ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆51Updated 2 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 5 years ago
• verilylifesciences / variant-qc
  Quality control methods for human genomic variants.
  ☆62Updated 3 years ago
• datacarpentry / shell-genomics
  Introduction to the Command Line for Genomics
  ☆67Updated last week
• daler / biomartpy
  Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)
  ☆17Updated 11 years ago
• sjspielman / pyvolve
  Python library to simulate evolutionary sequence data
  ☆80Updated 3 years ago
• lancelafontaine / bioinformatics-compbio-tools
  A curated list of useful bioinformatics and computational biology tools, sorted by category.
  ☆55Updated 10 years ago
• avrilcoghlan / LittleBookofRBioinformatics
  A Little Book of R for Bioinformatics
  ☆52Updated 12 years ago